Dynamic activation of protein function: A view emerging from NMR spectroscopy - Nature.com

		BioNMR > NMR community > Online News
Dynamic activation of protein function: A view emerging from NMR spectroscopy - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-28-2023, 10:50 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,674

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Dynamic activation of protein function: A view emerging from NMR spectroscopy - Nature.com

Dynamic activation of protein function: A view emerging from NMR spectroscopy - Nature.com

Dynamic activation of protein function: A view emerging from NMR spectroscopy Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway - Nature.com Solid-state NMR spectroscopy based atomistic view of a membrane protein unfolding pathway Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins - ScienceDirect Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins - ScienceDirect Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
An atlas of Arabidopsis protein S-acylation reveals its widespread role in plant cell organization and function - Nature.com An atlas of Arabidopsis protein S-acylation reveals its widespread role in plant cell organization and function - Nature.com An atlas of Arabidopsis protein S-acylation reveals its widespread role in plant cell organization and function Nature.com Read here	nmrlearner	Online News	0	06-09-2022 10:35 PM
A backbone-centred energy function of neural networks for protein design - Nature.com A backbone-centred energy function of neural networks for protein design - Nature.com A backbone-centred energy function of neural networks for protein design Nature.com Read here	nmrlearner	Online News	0	02-11-2022 05:12 AM
Time-resolved protein activation by proximal decaging in living systems - Nature.com Time-resolved protein activation by proximal decaging in living systems - Nature.com Time-resolved protein activation by proximal decaging in living systems Nature.comA universal gain-of-function approach for selective and temporal control of protein activity in living systems is crucial to understanding dynamic cellular ... Read here	nmrlearner	Online News	0	05-09-2019 05:55 AM
[NMR paper] Challenges and approaches to understand cholesterol-binding impact on membrane protein function: an NMR view. Challenges and approaches to understand cholesterol-binding impact on membrane protein function: an NMR view. Challenges and approaches to understand cholesterol-binding impact on membrane protein function: an NMR view. Cell Mol Life Sci. 2018 Mar 08;: Authors: Jaipuria G, Ukmar-Godec T, Zweckstetter M Abstract Experimental evidence for a direct role of lipids in determining the structure, dynamics, and function of membrane proteins leads to the term 'functional lipids'. In particular, the sterol molecule cholesterol modulates...	nmrlearner	Journal club	0	03-10-2018 04:36 PM
[NMR paper] An emerging concept of biomolecular dynamics and function: applications of NMR & MRI. An emerging concept of biomolecular dynamics and function: applications of NMR & MRI. Related Articles An emerging concept of biomolecular dynamics and function: applications of NMR & MRI. Magn Reson Med Sci. 2002;1(1):27-31 Authors: Kuwata K A new concept of protein dynamics has emerged quite recently, and a crucial link between protein dynamics and function has been largely established using recent NMR techniques in the solution state. Protein structure is governed by the thermodynamic principle and may not necessarily be unique in the...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] Dynamic activation of protein function: a view emerging from NMR spectroscopy. Dynamic activation of protein function: a view emerging from NMR spectroscopy. Related Articles Dynamic activation of protein function: a view emerging from NMR spectroscopy. Nat Struct Biol. 2001 Nov;8(11):926-31 Authors: Wand AJ Recent developments in solution NMR methods have allowed for an unprecedented view of protein dynamics. Current insights into the nature of protein dynamics and their potential influence on protein structure, stability and function are reviewed. Particular emphasis is placed on the potential of fast side chain motion...	nmrlearner	Journal club	0	11-19-2010 08:44 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off