DNA-nanotube-induced alignment of membrane proteins for NMR structure determination - pnas.org

		BioNMR > NMR community > Online News
DNA-nanotube-induced alignment of membrane proteins for NMR structure determination - pnas.org

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

View First Unread

Thread Tools

Search this Thread

Rate Thread

Display Modes

Today, 02:21 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,621

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

DNA-nanotube-induced alignment of membrane proteins for NMR structure determination - pnas.org

DNA-nanotube-induced alignment of membrane proteins for NMR structure determination - pnas.org

DNA-nanotube-induced alignment of membrane proteins for NMR structure determination pnas.org Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Membrane protein isolation and structure determination in cell ... - pnas.org Membrane protein isolation and structure determination in cell ... - pnas.org Membrane protein isolation and structure determination in cell ... pnas.org Read here	nmrlearner	Online News	0	06-06-2023 09:06 PM
Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) - pnas.org Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) - pnas.org Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) pnas.org Read here	nmrlearner	Online News	0	03-18-2022 12:01 AM
Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) - pnas.org Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) - pnas.org Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies) pnas.org Read here	nmrlearner	Online News	0	10-08-2021 08:45 AM
[NMR paper] Magnetically Induced Alignment of Natural Products for Stereochemical Structure Determination via NMR Magnetically Induced Alignment of Natural Products for Stereochemical Structure Determination via NMR Angewandte Chemie International Edition, Accepted Article. More...	nmrlearner	Journal club	0	05-05-2020 04:08 AM
[NMR paper] Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR. Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR. Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR. Biophys J. 2015 Jan 6;108(1):5-9 Authors: Marek A, Tang W, Milikisiyants S, Nevzorov AA, Smirnov AI Abstract Anodic aluminum oxide substrates with macroscopically aligned homogeneous nanopores of 80*nm in diameter enable two-dimensional, solid-state nuclear magnetic resonance studies of lipid-induced...	nmrlearner	Journal club	0	01-08-2015 01:29 PM
Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR Nanotube Array Method for Studying Lipid-Induced Conformational Changes of a Membrane Protein by Solid-State NMR Publication date: 6 January 2015 Source:Biophysical Journal, Volume 108, Issue 1</br> Author(s): Antonin Marek , Wenxing Tang , Sergey Milikisiyants , AlexanderA. Nevzorov , AlexI. Smirnov</br> Anodic aluminum oxide substrates with macroscopically aligned homogeneous nanopores of 80*nm in diameter enable two-dimensional, solid-state nuclear magnetic resonance studies of lipid-induced conformational changes of uniformly 15N-labeled Pf1 coat protein...	nmrlearner	Journal club	0	01-07-2015 11:26 AM
Structure determination of ?–helical membrane proteins by solution-state NMR: Emphasis on retinal proteins Structure determination of ?–helical membrane proteins by solution-state NMR: Emphasis on retinal proteins Publication date: Available online 2 July 2013 Source:Biochimica et Biophysica Acta (BBA) - Bioenergetics</br> Author(s): Antoine Gautier</br> The biochemical processes of living cells involve a numerous series of reactions that work with exceptional specificity and efficiency. The tight control of this intricate reaction network stems from the architecture of the proteins that drive the chemical reactions and mediate protein–protein interactions. Indeed, the...	nmrlearner	Journal club	0	07-02-2013 09:44 AM
[NMR paper] Studies of single-walled carbon nanotube-induced hepatotoxicity by NMR-based metabonomics of rat blood plasma and liver extracts. Studies of single-walled carbon nanotube-induced hepatotoxicity by NMR-based metabonomics of rat blood plasma and liver extracts. Studies of single-walled carbon nanotube-induced hepatotoxicity by NMR-based metabonomics of rat blood plasma and liver extracts. Nanoscale Res Lett. 2013 May 16;8(1):236 Authors: Lin B, Zhang H, Lin Z, Fang Y, Tian L, Yang H, Yan J, Liu H, Zhang W, Xi Z Abstract The toxicological effects of single-walled carbon nanotubes (SWCNTs) were investigated after intratracheal instillation in male Wistar rats over...	nmrlearner	Journal club	0	05-18-2013 09:42 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off