Decoding 'sweet codes' that determine protein fates - EurekAlert (press release)

		BioNMR > NMR community > Online News
Decoding 'sweet codes' that determine protein fates - EurekAlert (press release)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-13-2014, 11:35 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Decoding 'sweet codes' that determine protein fates - EurekAlert (press release)

Decoding 'sweet codes' that determine protein fates - EurekAlert (press release)

Decoding 'sweet codes' that determine protein fates
EurekAlert (press release)
Many experimentalists and theorists have taken on the challenge to solve this problem. NMR spectroscopy is one of the most promising experimental approaches for conformational analyses of the sugar chains because of its ability to determine geometrical ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
How red tide knocks out its competition - EurekAlert (press release) <img alt="" height="1" width="1" /> How red tide knocks out its competition EurekAlert (press release) The research team used a combination of mass spectrometry and nuclear magnetic resonance spectroscopy to form a holistic picture of what's happening inside the competitor algae. The study is the first time that metabolites and proteins were measured ... and more » How red tide knocks out its competition - EurekAlert (press release) More...	nmrlearner	Online News	0	06-05-2014 04:03 AM
Researchers discover how the kissing disease virus hijacks human cells - EurekAlert (press release) <img alt="" height="1" width="1" /> Researchers discover how the kissing disease virus hijacks human cells EurekAlert (press release) Using cutting-edge nuclear magnetic resonance techniques at the University of Montreal facility for structural biology in the Department of Biochemistry and Molecular Medicine, the scientists studied how the EBNA2 protein of the EBV virus binds to one ... and more » Researchers discover how the kissing disease virus hijacks human cells - EurekAlert (press release) More...	nmrlearner	Online News	0	04-10-2014 02:25 PM
The Protein Society announces its 2014 award recipients - EurekAlert (press release) <img alt="" height="1" width="1" /> The Protein Society announces its 2014 award recipients EurekAlert (press release) The recipient of this award in 2014 is Dr. Robert Tycko (National Institutes of Health) for his seminal contributions to the development of modern solid state nuclear magnetic resonance methods for structural investigations of proteins and influential ... and more » The Protein Society announces its 2014 award recipients - EurekAlert (press release) More...	nmrlearner	Online News	0	02-13-2014 03:35 PM
Scientists find new source of versatility so 'floppy' proteins can get things done - EurekAlert (press release) Scientists find new source of versatility so 'floppy' proteins can get things done - EurekAlert (press release) <img alt="" height="1" width="1" /> Scientists find new source of versatility so 'floppy' proteins can get things done EurekAlert (press release) But IDPs don't connect willy-nilly with other proteins, and scientists have wondered how they regulate their diverse interactions. Wright's laboratory and others have been studying these interactions using a technique called nuclear magnetic resonance ... Read here	nmrlearner	Online News	0	06-21-2013 12:16 AM
Protein structures give disease clues - EurekAlert (press release) <img alt="" height="1" width="1" /> Protein structures give disease clues EurekAlert (press release) Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules -- potentially leading to new ways to treat ... and more » Protein structures give disease clues - EurekAlert (press release) More...	nmrlearner	Online News	0	02-01-2012 09:28 PM
Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... - EurekAlert (press release) <img alt="" height="1" width="1" /> Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... EurekAlert (press release) Nuclear magnetic resonance (NMR) spectroscopy was used to pinpoint molecules with even a weak affinity for binding to Ras oncoproteins. The researchers identified 25 compounds, none of which knocked out the oncoprotein. ... and more » Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... - EurekAlert (press release) More...	nmrlearner	Online News	0	12-05-2011 04:07 AM
Scripps Research scientists find E. coli enzyme must move to function - EurekAlert (press release) <img alt="" height="1" width="1" /> Scripps Research scientists find E. coli enzyme must move to function EurekAlert (press release) For the new study, the scientists turned to an imaging technique known as nuclear magnetic resonance (NMR) spectroscopy, in combination with X-ray crystallography. Unlike X-ray crystallography, a technique used to determine the structure of proteins in ... and more » Scripps Research scientists find E. coli enzyme must move to function - EurekAlert (press release) More...	nmrlearner	Online News	0	04-07-2011 11:40 PM
Common 'chaperone' protein found to work in surprising way, say Scripps ... - EurekAlert (press release) Common 'chaperone' protein found to work in surprising way, say Scripps ... - EurekAlert (press release) <img alt="" height="1" width="1" /> Common 'chaperone' protein found to work in surprising way, say Scripps ... EurekAlert (press release) "None of these studies was able to pinpoint either what the client protein looked like in the complex or what part of Hsp90 was contacting the client." In the new study, the team used protein nuclear magnetic resonance (NMR) spectroscopy; ... and more » Read here	nmrlearner	Online News	0	04-03-2011 10:00 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off