Dancing proteins: HIV targets - spectroscopyNOW.com

		BioNMR > NMR community > Online News
Dancing proteins: HIV targets - spectroscopyNOW.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-19-2014, 04:31 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Dancing proteins: HIV targets - spectroscopyNOW.com

Dancing proteins: HIV targets - spectroscopyNOW.com

Dancing proteins: HIV targets
spectroscopyNOW.com
New targets for preventative therapies of HIV infection might now be possible thanks to new studies that reveal the 'dance' of HIV proteins on the surface of the virus that are thought to be involved in the infection of human immune cells. Single ...

and more »
Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Role of Electrostatic Interactions in Binding of Peptidesand Intrinsically Disordered Proteins to Their Folded Targets. 1.NMR and MD Characterization of the Complex between the c-Crk N-SH3 Domain and the PeptideSos Role of Electrostatic Interactions in Binding of Peptidesand Intrinsically Disordered Proteins to Their Folded Targets. 1.NMR and MD Characterization of the Complex between the c-Crk N-SH3 Domain and the PeptideSos http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi500904f/20141007/images/medium/bi-2014-00904f_0012.gif Biochemistry DOI: 10.1021/bi500904f http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/uw_59WsXyRU More...	nmrlearner	Journal club	0	10-08-2014 04:17 AM
[NMR paper] The role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between c-Crk N SH3 domain and peptide Sos. The role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between c-Crk N SH3 domain and peptide Sos. Related Articles The role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 1. NMR and MD characterization of the complex between c-Crk N SH3 domain and peptide Sos. Biochemistry. 2014 Sep 10; Authors: Xue Y, Yuwen T, Zhu F, Skrynnikov NR Abstract ...	nmrlearner	Journal club	0	09-11-2014 02:54 PM
Heteronuclear Cross-Relaxation Effects in the NMR Spectroscopy of Hyperpolarized Targets From The DNP-NMR Blog: Heteronuclear Cross-Relaxation Effects in the NMR Spectroscopy of Hyperpolarized Targets Donovan, K.J., A. Lupulescu, and L. Frydman, Heteronuclear Cross-Relaxation Effects in the NMR Spectroscopy of Hyperpolarized Targets. ChemPhysChem, 2014. 15(3): p. 436-443. http://www.ncbi.nlm.nih.gov/pubmed/24403222	nmrlearner	News from NMR blogs	0	04-19-2014 06:02 AM
Brown University biochemist targets diabetes - News-Medical.net <img alt="" height="1" width="1" /> Brown University biochemist targets diabetes News-Medical.net He and his collaborators have refined these proteins in the lab to the degree that they and their interactions can now be fully analyzed with advanced techniques such as nuclear magnetic resonance spectroscopy and X-ray crystallography. Last year, when ... NEW: Brown Biochemist Receives $1.625M Award for Diabetes ResearchGoLocalProv all 5 news articles » Brown University biochemist targets diabetes - News-Medical.net More...	nmrlearner	Online News	0	01-10-2014 06:01 PM
Milk fraud: Proteins uncover adulteration with cheaper milk - spectroscopyNOW.com Milk fraud: Proteins uncover adulteration with cheaper milk - spectroscopyNOW.com http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcTPhUrjUOyniFW8FePgJAbHPHWHY_0HkTRUZK1DeoZHstj1f_5RCgyZ0QyoxSAejg0Dp_hOaD4o spectroscopyNOW.com <img alt="" height="1" width="1" /> Milk fraud: Proteins uncover adulteration with cheaper milk spectroscopyNOW.com In particular, NMR and IR spectroscopy, mass spectrometry, capillary electrophoresis, ELISA and the polymerase chain reaction have been successfully employed. A further technique is 2D gel electrophoresis (2-DE) which has been reported...	nmrlearner	Online News	0	12-01-2013 09:21 PM
NMR advance brings proteins into the open - spectroscopyNOW.com <img alt="" height="1" width="1" /> NMR advance brings proteins into the open spectroscopyNOW.com A key protein interaction, common across all forms of life, had eluded scientists' observation until a team of researchers cracked the case by combining data from four different techniques of nuclear magnetic resonance spectroscopy. Providence, R.I ... NMR advance brings proteins into the open - spectroscopyNOW.com More...	nmrlearner	Online News	0	06-26-2013 09:39 AM
Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com Fold it: Solid-state NMR unravels proteins - spectroscopyNOW.com <img alt="" height="1" width="1" /> Fold it: Solid-state NMR unravels proteins spectroscopyNOW.com Researchers have developed a novel solid-state NMR spectroscopic method that uses paramagnetic tags to help them visualize the shape of protein molecules. The technique could be used to help scientists understand the properties of various biological ... Read here	nmrlearner	Online News	0	04-01-2012 03:58 PM
[NMR paper] High-throughput screening of structural proteomics targets using NMR. High-throughput screening of structural proteomics targets using NMR. Related Articles High-throughput screening of structural proteomics targets using NMR. FEBS Lett. 2003 Sep 25;552(2-3):207-13 Authors: Galvão-Botton LM, Katsuyama AM, Guzzo CR, Almeida FC, Farah CS, Valente AP We applied a high-throughput strategy for the screening of targets for structural proteomics of Xanthomonas axonopodis pv citri. This strategy is based on the rapid (1)H-(15)N HSQC NMR analysis of bacterial lysates containing selectively (15)N-labelled heterologous...	nmrlearner	Journal club	0	11-24-2010 09:16 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off