Computer model offers more control over protein design - MIT News

		BioNMR > NMR community > Online News
Computer model offers more control over protein design - MIT News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2019, 10:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Computer model offers more control over protein design - MIT News

Computer model offers more control over protein design - MIT News

Computer model offers more control over protein design MIT NewsMIT biologists have come up with a computer model that can predict how different peptide sequences will interact with a target protein. This strategy generates a ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News Pressure control helps NMR analyze protein as it folds Chemical & Engineering NewsResearchers have long wanted to better understand the way an unfolded protein chain reaches its final folded structure. But experimental tools needed to probe ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Computer model may help scientists split up, reassemble proteins on command - Phys.org Computer model may help scientists split up, reassemble proteins on command - Phys.org Computer model may help scientists split up, reassemble proteins on command Phys.orgSplitting up and getting back together is always hard to do, but for proteins, it's almost impossible. Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Computer model for designing protein sequences optimized to bind to drug targets - Phys.org Computer model for designing protein sequences optimized to bind to drug targets - Phys.org Computer model for designing protein sequences optimized to bind to drug targets Phys.orgDesigning synthetic proteins that can act as drugs for cancer or other diseases can be a tedious process: It generally involves creating a library of millions of ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Pressure control helps NMR analyze protein as it foldsï»¿ - Chemical & Engineering News Pressure control helps NMR analyze protein as it foldsï»¿ - Chemical & Engineering News http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcSv5E-WTTG-SSrt6aEWiblWl7IBJrpLDUs5chaZdcqSCFuhbLXDquKpMNhQaLQjZiTY76DbMS4I Chemical & Engineering News <img alt="" height="1" width="1"> Pressure control helps NMR analyze protein as it foldsï»¿ Chemical & Engineering News The methodology makes it possible to determine atomic-resolution structures of folding intermediates and to study disease-related events such as protein aggregation and fibril formation. â??The importance of the work is...	nmrlearner	Online News	0	04-27-2018 05:00 AM
Pressure control helps NMR analyze protein as it foldsï»¿ - Chemical & Engineering News Pressure control helps NMR analyze protein as it foldsï»¿ - Chemical & Engineering News http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcSv5E-WTTG-SSrt6aEWiblWl7IBJrpLDUs5chaZdcqSCFuhbLXDquKpMNhQaLQjZiTY76DbMS4I Chemical & Engineering News <img alt="" height="1" width="1"> Pressure control helps NMR analyze protein as it foldsï»¿ Chemical & Engineering News The methodology makes it possible to determine atomic-resolution structures of folding intermediates and to study disease-related events such as protein aggregation and fibril formation. â??The importance of the work is...	nmrlearner	Online News	0	04-20-2018 01:59 AM
Discovery of key protein's structure may help improve drug design - News-Medical.net Discovery of key protein's structure may help improve drug design - News-Medical.net <img alt="" height="1" width="1"> Discovery of key protein's structure may help improve drug design News-Medical.net Scientists at The Scripps Research Institute have peered deep into the heart of a key protein used in drug design and discovered dynamic structural features that may lead to new ways to target diseases. and more » Read here	nmrlearner	Online News	0	12-30-2017 10:44 AM
Design, Characterization, and Use of a Novel Amyloid?-Protein Control for Assembly, Neurotoxicity, and GeneExpression Studies Design, Characterization, and Use of a Novel Amyloid?-Protein Control for Assembly, Neurotoxicity, and GeneExpression Studies http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00579/20160826/images/medium/bi-2016-005796_0010.gif Biochemistry DOI: 10.1021/acs.biochem.6b00579 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/UIWx7_r3lD0 More...	nmrlearner	Journal club	0	08-31-2016 02:34 PM
[NMR paper] Computer-Aided Design of Fragment Mixtures for NMR-Based Screening. Computer-Aided Design of Fragment Mixtures for NMR-Based Screening. Related Articles Computer-Aided Design of Fragment Mixtures for NMR-Based Screening. PLoS One. 2013;8(3):e58571 Authors: Arroyo X, Goldflam M, Feliz M, Belda I, Giralt E Abstract Fragment-based drug discovery is widely applied both in industrial and in academic screening programs. Several screening techniques rely on NMR to detect binding of a fragment to a target. NMR-based methods are among the most sensitive techniques and have the further advantage of yielding a low...	nmrlearner	Journal club	0	03-22-2013 06:10 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off