Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance - Nature.com

		BioNMR > NMR community > Online News
Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-21-2022, 04:02 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance - Nature.com

Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance - Nature.com

Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Structure-based rational design of an enhanced fluorogen-activating protein for fluorogens based on GFP chromophore \| Communications Biology - Nature.com Structure-based rational design of an enhanced fluorogen-activating protein for fluorogens based on GFP chromophore \| Communications Biology - Nature.com Structure-based rational design of an enhanced fluorogen-activating protein for fluorogens based on GFP chromophore \| Communications Biology Nature.com Read here	nmrlearner	Online News	0	07-17-2022 10:07 PM
Mutations linked to neurological disease enhance self-association of low-complexity protein sequences - Science Mutations linked to neurological disease enhance self-association of low-complexity protein sequences Science Mutations linked to neurological disease enhance self-association of low-complexity protein sequences - Science More...	nmrlearner	Online News	0	07-01-2022 10:59 AM
Human HELB is a processive motor protein that catalyzes RPA clearance from single-stranded DNA - pnas.org Human HELB is a processive motor protein that catalyzes RPA clearance from single-stranded DNA - pnas.org Human HELB is a processive motor protein that catalyzes RPA clearance from single-stranded DNA pnas.org Read here	nmrlearner	Online News	0	05-08-2022 07:22 AM
Proteasomal degradation of the intrinsically disordered protein tau at single-residue resolution - Science Advances Proteasomal degradation of the intrinsically disordered protein tau at single-residue resolution - Science Advances Proteasomal degradation of the intrinsically disordered protein tau at single-residue resolution Science Advances Read here	nmrlearner	Online News	0	07-22-2020 09:36 PM
Fluorescence-activating beta-barrel protein made from scratch for first time - Phys.org Fluorescence-activating beta-barrel protein made from scratch for first time - Phys.org Fluorescence-activating beta-barrel protein made from scratch for first time Phys.orgFor the first time, scientists have created, entirely from scratch, a protein capable of binding to a small target molecule. Researchers from the University of ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles #DNPNMR From The DNP-NMR Blog: Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Masion, A., et al., Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles. Sci Rep, 2017. 7(1): p. 3430. https://www.ncbi.nlm.nih.gov/pubmed/28611402	nmrlearner	News from NMR blogs	0	08-07-2017 07:31 PM
Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles #DNPNMR From The DNP-NMR Blog: Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles #DNPNMR p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Masion, A., et al., Dynamic Nuclear Polarization NMR as a new tool to investigate the nature of organic compounds occluded in plant silica particles. Sci Rep, 2017. 7(1): p. 3430. https://www.ncbi.nlm.nih.gov/pubmed/28611402	nmrlearner	News from NMR blogs	0	07-10-2017 02:13 PM
[NMR paper] Determination of solution conformations of PrP106-126, a neurotoxic fragment of prion Determination of solution conformations of PrP106-126, a neurotoxic fragment of prion protein, by 1H NMR and restrained molecular dynamics. Related Articles Determination of solution conformations of PrP106-126, a neurotoxic fragment of prion protein, by 1H NMR and restrained molecular dynamics. Eur J Biochem. 1999 Dec;266(3):1192-201 Authors: Ragg E, Tagliavini F, Malesani P, Monticelli L, Bugiani O, Forloni G, Salmona M Experimental two-dimensional 1H NMR data have been obtained for PrP106-128 under the following solvent conditions:...	nmrlearner	Journal club	0	11-18-2010 08:31 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off