COMPASS method points researchers to protein structures University of Illinois ... - EurekAlert (press release)

		BioNMR > NMR community > Online News
COMPASS method points researchers to protein structures University of Illinois ... - EurekAlert (press release)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-17-2015, 03:40 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,714

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

COMPASS method points researchers to protein structures University of Illinois ... - EurekAlert (press release)

COMPASS method points researchers to protein structures University of Illinois ... - EurekAlert (press release)

EurekAlert (press release)

COMPASS method points researchers to protein structures University of Illinois ...
EurekAlert (press release)
CHAMPAIGN, Ill.-- Searching for the precise, complexly folded three-dimensional structure of a protein can be like hacking through a jungle without a map: a long, intensive process with uncertain direction. University of Illinois researchers developed ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
COMPASS method points researchers to protein structures - Phys.Org http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcRmBPZswgOKAIYlftnfaGoIXYDZ46iT_PHYA8yPYECJHv4xy3f7fZOhLoEUjCWbmmQIzk5wRz7q Phys.Org <img alt="" height="1" width="1"> COMPASS method points researchers to protein structures Phys.Org Graduate student Joseph Courtney and chemistry professor Chad Rienstra developed a method to quickly and reliably determine a proteins intricately folded structure Credit: L. Brian Stauffer. Searching for the precise, complexly folded three-dimensional ... and more » COMPASS method points researchers to protein structures - Phys.Org	nmrlearner	Online News	0	10-16-2015 12:49 AM
Public Release: 18-Jun-2015 Researchers bring to life proteins' motion - EurekAlert (press release) Public Release: 18-Jun-2015 Researchers bring to life proteins' motion - EurekAlert (press release) http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcQMLuIY_EpWpgZPw1zLhI8dTtIA6LHnJmaK3IIJwMdfqfbT6p4cD1OnqGeLpeMqC9Lho0kbjIWS EurekAlert (press release) <img alt="" height="1" width="1"> Public Release: 18-Jun-2015 Researchers bring to life proteins' motion EurekAlert (press release) The one experimental technique through which scientists could observe motion, nuclear magnetic resonance (NMR) spectroscopy, has been used with fewer than 1 percent of proteins because the majority of...	nmrlearner	Online News	0	06-19-2015 02:12 AM
Public Release: 6-May-2015 Magic spin put on protein to tease out its 1st ... - EurekAlert (press release) Public Release: 6-May-2015 Magic spin put on protein to tease out its 1st ... - EurekAlert (press release) http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcT6bb2xShL8rCe4MjWU6XWHQs-DSrX4qBh_OrgUUBWs7TPY9jMID-zp4ClJoaS2VKgzbsaNxZXu EurekAlert (press release) <img alt="" height="1" width="1"> Public Release: 6-May-2015 Magic spin put on protein to tease out its 1st ... EurekAlert (press release) ... the collaborative group of researchers used a method called Magic Angle Spinning Solid-State NMR Spectroscopy to determine the order in which the components of a protein, called...	nmrlearner	Online News	0	05-07-2015 12:59 AM
Decoding 'sweet codes' that determine protein fates - EurekAlert (press release) Decoding 'sweet codes' that determine protein fates - EurekAlert (press release) <img alt="" height="1" width="1" /> Decoding 'sweet codes' that determine protein fates EurekAlert (press release) Many experimentalists and theorists have taken on the challenge to solve this problem. NMR spectroscopy is one of the most promising experimental approaches for conformational analyses of the sugar chains because of its ability to determine geometrical ... Read here	nmrlearner	Online News	0	09-13-2014 11:35 AM
Researchers discover how the kissing disease virus hijacks human cells - EurekAlert (press release) <img alt="" height="1" width="1" /> Researchers discover how the kissing disease virus hijacks human cells EurekAlert (press release) Using cutting-edge nuclear magnetic resonance techniques at the University of Montreal facility for structural biology in the Department of Biochemistry and Molecular Medicine, the scientists studied how the EBNA2 protein of the EBV virus binds to one ... and more » Researchers discover how the kissing disease virus hijacks human cells - EurekAlert (press release) More...	nmrlearner	Online News	0	04-10-2014 02:25 PM
The Protein Society announces its 2014 award recipients - EurekAlert (press release) <img alt="" height="1" width="1" /> The Protein Society announces its 2014 award recipients EurekAlert (press release) The recipient of this award in 2014 is Dr. Robert Tycko (National Institutes of Health) for his seminal contributions to the development of modern solid state nuclear magnetic resonance methods for structural investigations of proteins and influential ... and more » The Protein Society announces its 2014 award recipients - EurekAlert (press release) More...	nmrlearner	Online News	0	02-13-2014 03:35 PM
Protein structures give disease clues - EurekAlert (press release) <img alt="" height="1" width="1" /> Protein structures give disease clues EurekAlert (press release) Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules -- potentially leading to new ways to treat ... and more » Protein structures give disease clues - EurekAlert (press release) More...	nmrlearner	Online News	0	02-01-2012 09:28 PM
Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... - EurekAlert (press release) <img alt="" height="1" width="1" /> Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... EurekAlert (press release) Nuclear magnetic resonance (NMR) spectroscopy was used to pinpoint molecules with even a weak affinity for binding to Ras oncoproteins. The researchers identified 25 compounds, none of which knocked out the oncoprotein. ... and more » Inhibitors of infamous Ras oncogene reported by Genentech researchers at ASCB ... - EurekAlert (press release) More...	nmrlearner	Online News	0	12-05-2011 04:07 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off