Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors - Wiley

		BioNMR > NMR community > Online News
Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors - Wiley

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-21-2021, 01:04 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors - Wiley

Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors - Wiley

Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors Wiley Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
The envelope protein of SARS-CoV-2 increases intra-Golgi pH and forms a cation channel that is regulated by pH - Wiley The envelope protein of SARS-CoV-2 increases intra-Golgi pH and forms a cation channel that is regulated by pH - Wiley The envelope protein of SARS-CoV-2 increases intra-Golgi pH and forms a cation channel that is regulated by pH Wiley Read here	nmrlearner	Online News	0	04-06-2021 02:00 AM
The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR - DocWire News The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR - DocWire News The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR DocWire News Read here	nmrlearner	Online News	0	03-31-2021 11:12 AM
The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR - DocWire News The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR - DocWire News The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR DocWire News Read here	nmrlearner	Online News	0	03-05-2021 09:09 AM
[NMR paper] The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR The highly flexible disordered regions of the SARS-CoV-2 nucleocapsid N protein within the 1-248 residue construct: sequence-specific resonance assignments through NMR The nucleocapsid protein N from SARS-CoV-2 is one of the most highly expressed proteins by the virus and plays a number of important roles in the transcription and assembly of the virion within the infected host cell. It is expected to be characterized by a highly dynamic and heterogeneous structure as can be inferred by bioinformatics analyses as well as from the data available for the homologous protein from SARS-CoV. The...	nmrlearner	Journal club	0	03-04-2021 12:41 PM
Evolutionary dynamics of SARS-CoV-2 nucleocapsid protein and its consequences - Wiley Evolutionary dynamics of SARS-CoV-2 nucleocapsid protein and its consequences - Wiley Evolutionary dynamics of SARS-CoV-2 nucleocapsid protein and its consequences Wiley Read here	nmrlearner	Online News	0	11-21-2020 08:41 AM
Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy Wiley Read here	nmrlearner	Online News	0	09-26-2020 07:23 AM
Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy - Wiley Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy Wiley Read here	nmrlearner	Online News	0	09-13-2020 09:18 AM
Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein - Wiley Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein - Wiley Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein Wiley Read here	nmrlearner	Online News	0	08-08-2020 10:56 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off