Characterization methods: Probing proteins with diamond defects - Nature.com

		BioNMR > NMR community > Online News
Characterization methods: Probing proteins with diamond defects - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-24-2019, 10:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Characterization methods: Probing proteins with diamond defects - Nature.com

Characterization methods: Probing proteins with diamond defects - Nature.com

Characterization methods: Probing proteins with diamond defects Nature.comRecent breakthroughs in NMR spectroscopy — traditionally limited to samples on a milligram scale — have brought the possibility of structural determination of ...

Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Characterization methods: Probing proteins with diamond defects - Nature.com Characterization methods: Probing proteins with diamond defects - Nature.com <img alt="" height="1" width="1"> Characterization methods: Probing proteins with diamond defects Nature.com Now, Mikhail Lukin, Hongkun Park and co-workers at Harvard University show that they can create NV centres with sufficient sensitivity to detect individual proton spins, which enables the analysis of individual protein molecules with NMR spectroscopy. Read here	nmrlearner	Online News	0	03-01-2016 05:59 PM
[NMR900 blog] NMR paper in Nature Methods NMR paper in Nature Methods S. Wang, R.A. Munro, L. Shi, I. Kawamura, T. Okitsu, A. Wada, S.-Y. Kim, K.-H. Jung, L.S. Brown and V. Ladizhansky, "Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein,"Nature Methods (2013) online. http://dx.doi.org/10.1038/nmeth.2635 "Research May Lead to New Drugs for Heart Disease, Other Ailments" September 09, 2013 - News Release, University of Guelph http://www.uoguelph.ca/news/2013/09/research_may_le.html Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	09-10-2013 08:00 AM
Diamond defects enable nanoscale nuclear magnetic resonance - PhysicsToday.org <img alt="" height="1" width="1" /> Diamond defects enable nanoscale nuclear magnetic resonance PhysicsToday.org Understanding a protein's function is difficult if you don't know its structure. The standard tools of the trade, x-ray crystallography and bulk nuclear magnetic resonance (NMR), work well for molecules that can be produced in macroscopic quantities ... Gifted physicist grew from hard work, opportunityTribune-Review all 2 news articles » Diamond defects enable nanoscale nuclear magnetic resonance - PhysicsToday.org More...	nmrlearner	Online News	0	03-29-2013 07:52 PM
Diamond defects shrink MRI to the nanoscale - Nature.com http://www.bionmr.com//nt1.ggpht.com/news/tbn/rbIxnOKpKqdUoM/6.jpg Nature.com <img alt="" height="1" width="1" /> Diamond defects shrink MRI to the nanoscale Nature.com Diamond-based quantum devices can now make nuclear magnetic resonance measurements on the molecular scale. Work by two independent groups will make it easier to find out the structure of single biological molecules such as proteins without ... Nanoscale MRI being developedPhys.Org Taking NMR And MRI To The NanoscaleThe Biological SCENE Next Generation: Nano-ImagingScientist separationsNOW.com (press release)	nmrlearner	Online News	0	02-01-2013 03:04 PM
Diamond defects produce nanoscale MRI - Nature.com http://www.bionmr.com//nt1.ggpht.com/news/tbn/rbIxnOKpKqdUoM/6.jpg Nature.com <img alt="" height="1" width="1" /> Diamond defects produce nanoscale MRI Nature.com Diamond-based quantum devices can now make nuclear magnetic resonance measurements on the molecular scale. Work by two independent groups will make it easier to find out the structure of single biological molecules such as proteins without ... Next Generation: Nano-ImagingScientist Diamond NMR probes single moleculesseparationsNOW.com (press release) all 3 news articles »	nmrlearner	Online News	0	02-01-2013 03:03 AM
[NMR900 blog] Review in Nature Methods Review in Nature Methods J.R. Bothe, E.N. Nikolova, C.D. Eichhorn, J. Chugh, A.L. Hansen and H.M. Al-Hashimi, "Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy," Nature Methods 8 (2011) 919–931. (Review) http://dx.doi.org/10.1038/nmeth.1735 https://blogger.googleusercontent.com/tracker/8663203727601106205-1377108512543150595?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	11-02-2011 02:14 AM
[NMR paper] NMR spin relaxation methods for characterization of disorder and folding in proteins. NMR spin relaxation methods for characterization of disorder and folding in proteins. Related Articles NMR spin relaxation methods for characterization of disorder and folding in proteins. J Mol Graph Model. 2001;19(1):3-12 Authors: Bracken C The flexibility and dynamics of proteins directly influence the processes of protein folding, recognition, and function. NMR spin relaxation methods are used to assess the dynamics and mobility of proteins, for fast ps and ns motions as well as slower microsecond and ms events. The degree of protein...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
[NMR paper] Probing the nature of the blue-shifted intermediate of photoactive yellow protein in Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies. Related Articles Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies. Biochemistry. 2000 Nov 28;39(47):14392-9 Authors: Craven CJ, Derix NM, Hendriks J, Boelens R, Hellingwerf KJ, Kaptein R The nature of the pB intermediate of photoactive yellow protein (PYP) from Ectothiorhodospira halophila has...	nmrlearner	Journal club	0	11-19-2010 08:29 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off