Characterization of functional disordered regions within chromatin-associated proteins - ScienceDirect.com

		BioNMR > NMR community > Online News
Characterization of functional disordered regions within chromatin-associated proteins - ScienceDirect.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-15-2024, 07:41 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Characterization of functional disordered regions within chromatin-associated proteins - ScienceDirect.com

Characterization of functional disordered regions within chromatin-associated proteins - ScienceDirect.com

Characterization of functional disordered regions within chromatin-associated proteins ScienceDirect.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Intrinsically disordered proteins studied by NMR spectroscopy - ScienceDirect Intrinsically disordered proteins studied by NMR spectroscopy - ScienceDirect Intrinsically disordered proteins studied by NMR spectroscopy ScienceDirect Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Fast NMR method to probe solvent accessibility and disordered regions in proteins \| Scientific Reports - Nature.com Fast NMR method to probe solvent accessibility and disordered regions in proteins \| Scientific Reports - Nature.com Fast NMR method to probe solvent accessibility and disordered regions in proteins \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Conformational buffering underlies functional selection in intrinsically disordered protein regions - Nature.com Conformational buffering underlies functional selection in intrinsically disordered protein regions - Nature.com Conformational buffering underlies functional selection in intrinsically disordered protein regions Nature.com Read here	nmrlearner	Online News	0	08-11-2022 01:49 PM
[NMR paper] NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins Intrinsically disordered proteins are ubiquitous throughout all known proteomes, playing essential roles in all aspects of cellular and extracellular biochemistry. To understand their function, it is necessary to determine their structural and dynamic behavior and to describe the physical chemistry of their interaction trajectories. Nuclear magnetic resonance is perfectly adapted to this task, providing ensemble averaged structural and dynamic parameters that report on each...	nmrlearner	Journal club	0	04-22-2022 03:01 AM
Solvent saturation transfer to proteins (SSTP) for structural and functional characterization of proteins Solvent saturation transfer to proteins (SSTP) for structural and functional characterization of proteins Abstract Protein structure determination using NMR is dependent on experimentally acquired distance restraints. Often, however, an insufficient number of these restraints are available for determining a proteinâ??s correct fold, much less its detailed three-dimensional structure. In consideration of this problem, we propose a simple means to acquire supplemental structural restraints from protein surface accessibilities using solvent saturation...	nmrlearner	Journal club	0	11-30-2017 05:01 PM
Using Isothermal Titration Calorimetry for Biophysical Characterization of Chromatin-Binding Proteins - News-Medical.net Using Isothermal Titration Calorimetry for Biophysical Characterization of Chromatin-Binding Proteins - News-Medical.net http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcSjxWhOWctvAA_L-9UDE3ufkiT94K_xq-P-YeTc-09I3x4H04SiM6ADLdY2zBipCXjujvZLEBQy News-Medical.net <img alt="" height="1" width="1"> Using Isothermal Titration Calorimetry for Biophysical Characterization of Chromatin-Binding Proteins News-Medical.net Structural studies like nuclear magnetic resonance (NMR) and X-ray crystallography provide additional validation and characterization. This article describes the...	nmrlearner	Online News	0	11-19-2016 08:35 PM
An assignment of intrinsically disordered regions of proteins based on NMR structures An assignment of intrinsically disordered regions of proteins based on NMR structures January 2013 Publication year: 2013 Source:Journal of Structural Biology, Volume 181, Issue 1</br> </br> Intrinsically disordered proteins (IDPs) do not adopt stable three-dimensional structures in physiological conditions, yet these proteins play crucial roles in biological phenomena. In most cases, intrinsic disorder manifests itself in segments or domains of an IDP, called intrinsically disordered regions (IDRs), but fully disordered IDPs also exist. Although IDRs can be detected as...	nmrlearner	Journal club	0	02-03-2013 10:13 AM
[KPWU blog] Web Severs for prediction of disordered regions (DRs) in proteins Web Severs for prediction of disordered regions (DRs) in proteins This list of web severs is obtained from the published paper “Evaluation of disorder predictions in CASP9” byAndriy Kryshtafovych. List of web servers and the methods descriptions (copy from table III of Kryshtafovych’s paper). Please read the paper for details of methods and performance. PrDOS2(http://prdos.hgc.jp/cgi-bin/top.cgi) SVM algorithm based on sequence profiles combined with a template-based http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=513&subd=kpwu&ref=&feed=1 Go to KPWU blog to...	nmrlearner	News from NMR blogs	0	09-05-2011 07:55 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off