Celebrating Successful RGV Grads: Joshua Amaya - The Valley Town Crier (blog)

		BioNMR > NMR community > Online News
Celebrating Successful RGV Grads: Joshua Amaya - The Valley Town Crier (blog)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-30-2015, 10:34 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Celebrating Successful RGV Grads: Joshua Amaya - The Valley Town Crier (blog)

The Valley Town Crier (blog)

Celebrating Successful RGV Grads: Joshua Amaya
The Valley Town Crier (blog)
In the lab, Joshua will learn techniques like protein purification and NMR (Nuclear Magnetic Resonance) protein spectroscopy. It is quite a challenge for a college sophomore, but Joshua always looks forward to a challenge. When reflecting on how his ...

Celebrating Successful RGV Grads: Joshua Amaya - The Valley Town Crier (blog)
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Rift Valley Virus: NMR clues Rift Valley Virus: NMR clues http://www.spectroscopynow.com/common/images/thumbnails/14d4d30c60a.jpgA US team has used NMR spectroscopy to investigate the structural properties of an important protein of the Rift Valley fever virus, a virus that causes infections in both humans and livestock similar to the Ebola virus. Read the rest at Spectroscopynow.com	nmrlearner	General	0	05-15-2015 07:52 AM
[NMR paper] Fast-pulsing NMR techniques for the detection of weak interactions: successful natural abundance probe of hydrogen bonds in peptides. Fast-pulsing NMR techniques for the detection of weak interactions: successful natural abundance probe of hydrogen bonds in peptides. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.rsc.org-images-entities-char_z_RSClogo.gif Related Articles Fast-pulsing NMR techniques for the detection of weak interactions: successful natural abundance probe of hydrogen bonds in peptides. Org Biomol Chem. 2013 Nov 21;11(43):7611-5 Authors: Altmayer-Henzien A, Declerck V, Aitken DJ, Lescop E, Merlet D, Farjon J Abstract ...	nmrlearner	Journal club	0	07-27-2014 01:05 AM
[Stan NMR blog] Celebrating the first Million Celebrating the first Million A rare self-celebrating entry on Stan's NMR Blog Source: Stan blog library	nmrlearner	News from NMR blogs	0	03-26-2012 07:34 PM
[CNS Yahoo group] PDB40 - Celebrating the 40th birthday of the PDB PDB40 - Celebrating the 40th birthday of the PDB The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is organising a scientific symposium in Cold Spring Harbor this autumn to celebrate the 40th anniversary of More...	nmrlearner	News from other NMR forums	0	07-07-2011 06:40 PM
[Stan NMR blog] Celebrating the first Million Celebrating the first Million A rare self-celebrating entry on Stan's NMR Blog Source: Stan blog library	nmrlearner	News from NMR blogs	0	04-10-2011 12:35 AM
[CNS Yahoo group] Special symposium celebrating the 40th birthday of the PDB Special symposium celebrating the 40th birthday of the PDB Hi all, In October 2011, the Worldwide Protein Data Bank (wwPDB; wwpdb.org) will host a scientific symposium in Cold Spring Harbor, celebrating the 40th More...	nmrlearner	News from other NMR forums	0	02-26-2011 12:49 AM
Overcoming the solubility limit with solubility-enhancement tags: successful applications in biomolecular NMR studies Overcoming the solubility limit with solubility-enhancement tags: successful applications in biomolecular NMR studies Abstract Although the rapid progress of NMR technology has significantly expanded the range of NMR-trackable systems, preparation of NMR-suitable samples that are highly soluble and stable remains a bottleneck for studies of many biological systems. The application of solubility-enhancement tags (SETs) has been highly effective in overcoming solubility and sample stability issues and has enabled structural studies of important biological systems previously deemed...	nmrlearner	Journal club	0	01-09-2011 12:46 PM
Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century Content Type Journal Article DOI 10.1007/s10858-010-9466-0 Authors	nmrlearner	Journal club	0	12-31-2010 08:38 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off