Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com

		BioNMR > NMR community > Online News
Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-24-2024, 08:25 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com

Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com

Backbone-independent NMR resonance assignments of methyl probes in large proteins Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks Nature.com Read here	nmrlearner	Online News	0	07-24-2024 08:25 AM
Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing - Nature.com Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing - Nature.com Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing Nature.com Read here	nmrlearner	Online News	0	07-24-2024 08:25 AM
Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks - Nature.com Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks Nature.com Read here	nmrlearner	Online News	0	06-15-2024 04:21 PM
Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com Backbone-independent NMR resonance assignments of methyl probes in large proteins - Nature.com Backbone-independent NMR resonance assignments of methyl probes in large proteins Nature.com Read here	nmrlearner	Online News	0	05-30-2024 07:50 AM
Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment - Nature.com Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment - Nature.com Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment Nature.com Read here	nmrlearner	Online News	0	02-18-2024 12:10 AM
Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing - Nature.com Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing - Nature.com Robust automated backbone triple resonance NMR assignments of proteins using Bayesian-based simulated annealing Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
Automatic structure-based NMR methyl resonance assignment in large proteins - Nature.com Automatic structure-based NMR methyl resonance assignment in large proteins - Nature.com Automatic structure-based NMR methyl resonance assignment in large proteins Nature.com Read here	nmrlearner	Online News	0	12-28-2023 10:50 PM
[NMR paper] Backbone-independent NMR resonance assignments of methyl probes in large proteins. Backbone-independent NMR resonance assignments of methyl probes in large proteins. Related Articles Backbone-independent NMR resonance assignments of methyl probes in large proteins. Nat Commun. 2021 Jan 29;12(1):691 Authors: Nerli S, De Paula VS, McShan AC, Sgourakis NG Abstract Methyl-specific isotope labeling is a powerful tool to study the structure, dynamics and interactions of large proteins and protein complexes by solution-state NMR. However, widespread applications of this methodology have been limited by challenges in...	nmrlearner	Journal club	0	01-31-2021 02:47 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off