Ancient Biological Clockwork Revealed Using 'Secret Sauce' - UC Merced University News

		BioNMR > NMR community > Online News
Ancient Biological Clockwork Revealed Using 'Secret Sauce' - UC Merced University News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-16-2017, 06:36 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Ancient Biological Clockwork Revealed Using 'Secret Sauce' - UC Merced University News

UC Merced University News

Ancient Biological Clockwork Revealed Using 'Secret Sauce'
UC Merced University News
... Golden in the Division of Biological Sciences at UC San Diego â?? captured the proteins in large complexes and made spectroscopic â??snapshotsâ?? of their different formations using X-ray crystallography and nuclear magnetic resonance (NMR) spectroscopy.

Ancient Biological Clockwork Revealed Using 'Secret Sauce' - UC Merced University News
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Professor or Associate Professor in Biological NMR Spetroscopy at Aarhus University (874792) \| Aarhus University Professor or Associate Professor in Biological NMR Spetroscopy at Aarhus University (874792) \| Aarhus University DNK - Aarhus, Applications are invited for a permanent position as Professor or Associate Professor at the Department of Chemistry, Aarhus University, Denmark (www.chem.au.dk). The intended starting date is August More...	nmrlearner	Job marketplace	0	12-22-2016 03:41 PM
Protein dance on nanoparticle surface revealed - The Biological SCENE <img alt="" height="1" width="1"> Protein dance on nanoparticle surface revealed The Biological SCENE The growing use of nanomaterials in biomedical applications makes understanding nanoparticle-protein interactions an important goal. Nuclear magnetic resonance spectroscopy is a promising way to probe such interactions. But because of the huge size ... Protein dance on nanoparticle surface revealed - The Biological SCENE More...	nmrlearner	Online News	0	05-16-2016 05:53 PM
Prestigious Keck Award granted to UC Merced bioengineer - University of California http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQhSNCiOFkPokcxxz4PrSus0Jp6HxsGZOj-SPio-BG9asObXDpoVz-IyCEp9CPPOEueZVw2Ad4k University of California <img alt="" height="1" width="1"> Prestigious Keck Award granted to UC Merced bioengineer University of California Developing these sensors requires using a multidisciplinary approach in which protein engineering and design is combined with single-molecule fluorescence microscopy, nuclear magnetic resonance, theoretical modeling and high-performance ... and more » Prestigious Keck Award granted to UC Merced bioengineer -...	nmrlearner	Online News	0	02-12-2016 11:01 AM
Biomedical Researcher Earns Respected Keck Award - UC Merced University News <img alt="" height="1" width="1"> Biomedical Researcher Earns Respected Keck Award UC Merced University News Developing these sensors requires using a multidisciplinary approach in which protein engineering and design is combined with single-molecule fluorescence microscopy, nuclear magnetic resonance, theoretical modeling and high-performance ... Biomedical Researcher Earns Respected Keck Award - UC Merced University News More...	nmrlearner	Online News	0	02-10-2016 09:28 PM
Researchers Describe Key Cellular Clockwork Behind Inflammation - Scicasts (press release) (blog) <img alt="" height="1" width="1"> Researchers Describe Key Cellular Clockwork Behind Inflammation Scicasts (press release) (blog) Nuclear magnetic resonance-derived images depict the structures of proteins Tom1 (green) and Tollip (red). These interactive regions are required for both proteins to achieve their cooperative function. Image: Daniel Capelluto/Virginia Tech. Researchers Describe Key Cellular Clockwork Behind Inflammation - Scicasts (press release) (blog) More...	nmrlearner	Online News	0	08-29-2015 09:18 PM
Science and Engineering Researchers Stay Busy in Summer - UC Merced University News http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQnsmcSkaJG6inNkH0MHxKrxK02sK7qS-VP30gSr_NN-yJD6HWyg7hmGYqLaI7R2H3zd_Vjp6o UC Merced University News <img alt="" height="1" width="1"> Science and Engineering Researchers Stay Busy in Summer UC Merced University News Once reassembled, the clock ticks for days and weeks on a lab bench, generating a macroscopic biochemical rhythm that can be studied at atomic resolution using nuclear magnetic resonance spectroscopy. Past studies have revealed that clock proteins ... Science and Engineering Researchers Stay Busy in Summer - UC...	nmrlearner	Online News	0	07-14-2015 02:59 AM
Probing an Ancient Protein's Dynamics with NMR Probing an Ancient Protein's Dynamics with NMR Publication date: 28 January 2014 Source:Biophysical Journal, Volume 106, Issue 2, Supplement 1</br> Author(s): Marc S. Hoemberger , Christopher G. Wilson , Dorothee Kern</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	01-29-2014 12:50 AM
Structural Biology: Biological NMR Spectrscopy \| Texas Tech University Structural Biology: Biological NMR Spectrscopy \| Texas Tech University US - Lubbock, TX, All applications must be submitted online. Online faculty application for requisition number 89872 can be found at http://jobs.texastech.edu/postings/57603. Applications must include a curric More...	nmrlearner	Job marketplace	0	10-19-2013 03:22 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off