Analyzing dynamic proteins | MIT News | Massachusetts Institute of Technology - MIT News

		BioNMR > NMR community > Online News
Analyzing dynamic proteins \| MIT News \| Massachusetts Institute of Technology - MIT News

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-06-2023, 02:55 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Analyzing dynamic proteins | MIT News | Massachusetts Institute of Technology - MIT News

Analyzing dynamic proteins | MIT News | Massachusetts Institute of Technology - MIT News

Analyzing dynamic proteins | MIT News | Massachusetts Institute of Technology MIT News Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Massachusetts Institute of Technology: Chemists reveal how tau proteins form tangles - India Education Diary Massachusetts Institute of Technology: Chemists reveal how tau proteins form tangles - India Education Diary Massachusetts Institute of Technology: Chemists reveal how tau proteins form tangles India Education Diary Read here	nmrlearner	Online News	0	06-05-2022 12:09 PM
Chemists reveal how tau proteins form tangles \| MIT News \| Massachusetts Institute of Technology - MIT News Chemists reveal how tau proteins form tangles \| MIT News \| Massachusetts Institute of Technology - MIT News Chemists reveal how tau proteins form tangles \| MIT News \| Massachusetts Institute of Technology MIT News Read here	nmrlearner	Online News	0	05-29-2022 03:31 AM
Analyzing protein structures in their native environment \| MIT News \| Massachusetts Institute of Technology - MIT News Analyzing protein structures in their native environment \| MIT News \| Massachusetts Institute of Technology - MIT News Analyzing protein structures in their native environment \| MIT News \| Massachusetts Institute of Technology MIT News Read here	nmrlearner	Online News	0	11-25-2021 02:57 PM
Analyzing protein structures in their native environment - MIT News Analyzing protein structures in their native environment - MIT News Analyzing protein structures in their native environment MIT NewsProteins can fold in different ways depending on their environment. These different configurations change the function of the protein; misfolding is frequently ... Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Analyzing dynamic proteins - MIT News Analyzing dynamic proteins - MIT News Analyzing dynamic proteins MIT NewsMIT chemistry professor Mei Hong develops new techniques for studying the dynamic structures of proteins embedded in cell membranes. Read here	nmrlearner	Online News	0	01-07-2019 05:49 AM
Analyzing dynamic proteins - MIT News Analyzing dynamic proteins - MIT News http://www.bionmr.com//t3.gstatic.com/images?q=tbn:ANd9GcTobNzta_RaEHeh6XPJeaAn7b1SOF0K8sCFAWm8oDbfVWWX9dLKH-0BLuWl5RqDkLwHX6DzhuVY MIT News <img alt="" height="1" width="1"> Analyzing dynamic proteins MIT News For her PhD thesis, Hong used NMR to study how phospholipids, the major building blocks of membranes, take on their shapes. These molecules consist of fatty tails that face inward and protein heads that face outward. This research helped prepare her ...	nmrlearner	Online News	0	08-08-2016 12:19 PM
Analyzing protein structures in their native environment - MIT News Analyzing protein structures in their native environment - MIT News http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcTcqYE5wgM8a6TqBqTYMSog4dYAq_wzIgq9PpZ2zCpiYjAuPJvlMV-Fsr8pWZC9atnwU4L56ij8 MIT News <img alt="" height="1" width="1"> Analyzing protein structures in their native environment MIT News Until now, it has been difficult to fully characterize the different structures that proteins can take on in their natural environments. However, using a new technique known as sensitivity-enhanced nuclear magnetic resonance (NMR), MIT researchers have ... and more »	nmrlearner	Online News	0	11-22-2015 01:36 AM
Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... - Genetic Engineering News http://nt1.ggpht.com/news/tbn/pbujffOLTN-5EM/6.jpg SunHerald.com <img alt="" height="1" width="1" /> Bruker and Berkeley Lab Combine NMR with SAXS for Analyzing Large Protein ... Genetic Engineering News Bruker and Lawrence Berkeley National Laboratory are collaborating to develop structural biology methods and tools that integrate small-angle x-ray scattering (SAXS) technology with nuclear magnetic resonance (NMR). The aim is to generate a set of data ... Bruker and Lawrence Berkeley National Laboratory Collaborate on Novel ...MarketWatch (press release) all 14 news articles »	nmrlearner	Online News	0	11-11-2011 08:26 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off