AlphaFold2 models indicate that protein sequence determines both structure and dynamics

		BioNMR > NMR community > Online News
AlphaFold2 models indicate that protein sequence determines both structure and dynamics \| Scientific Reports - Nature.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-11-2022, 01:49 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports - Nature.com

AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports - Nature.com

AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports Nature.com Read here

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Vav2 is a novel APP-interacting protein that regulates APP protein level \| Scientific Reports - Nature.com Vav2 is a novel APP-interacting protein that regulates APP protein level \| Scientific Reports - Nature.com Vav2 is a novel APP-interacting protein that regulates APP protein level \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	07-27-2022 04:09 AM
Role of a bacterial glycolipid in Sec-independent membrane protein insertion \| Scientific Reports - Nature.com Role of a bacterial glycolipid in Sec-independent membrane protein insertion \| Scientific Reports - Nature.com Role of a bacterial glycolipid in Sec-independent membrane protein insertion \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	07-18-2022 03:28 PM
Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition \| Scientific Reports - Nature.com Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition \| Scientific Reports - Nature.com Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	07-09-2022 07:39 AM
Assessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants \| Scientific Reports - Nature.com Assessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants \| Scientific Reports - Nature.com Assessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	05-21-2022 08:04 PM
Metabolite profiling and protein quantification to a large library of 96 horsegram (Macrotyloma uniflorum) germplasm \| Scientific Reports - Nature.com Metabolite profiling and protein quantification to a large library of 96 horsegram (Macrotyloma uniflorum) germplasm \| Scientific Reports - Nature.com Metabolite profiling and protein quantification to a large library of 96 horsegram (Macrotyloma uniflorum) germplasm \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	05-13-2022 02:23 AM
A database of calculated solution parameters for the AlphaFold predicted protein structures \| Scientific Reports - Nature.com A database of calculated solution parameters for the AlphaFold predicted protein structures \| Scientific Reports - Nature.com A database of calculated solution parameters for the AlphaFold predicted protein structures \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	05-05-2022 11:49 PM
Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports - Nature.com Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports - Nature.com Random sampling of the Protein Data Bank: RaSPDB \| Scientific Reports Nature.com Read here	nmrlearner	Online News	0	12-18-2021 07:26 AM
[NMR900 blog] NMR paper in Nature Scientific Reports NMR paper in Nature Scientific Reports C.E. Norris, S.A. Quideau, S.M. Landhäusser, G.M. Bernard and R.E. Wasylishen, "Tracking Stable Isotope Enrichment in Tree Seedlings with Solid-State NMR Spectroscopy," Nature Scientific Reports 2 (2012) 719. http://dx.doi.org/10.1038/srep00719https://blogger.googleusercontent.com/tracker/8663203727601106205-993472665316978490?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	10-17-2012 12:14 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off