AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com

		BioNMR > NMR community > Online News
AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-01-2020, 12:01 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com

AlphaFold Algorithm Predicts COVID-19 Protein Structures InfoQ.com
AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com
More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing - SelectScience Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing - SelectScience Aalto Bio Reagents launches first recombinant SARS-CoV-2 (COVID-19) nucleocapsid protein for diagnostic testing SelectScience Read here	nmrlearner	Online News	0	03-29-2020 12:14 PM
Lipoprotein insulin resistance measurement predicts future diabetes risk - Healio <img alt="" height="1" width="1"> Lipoprotein insulin resistance measurement predicts future diabetes risk Healio â??The lipoprotein insulin resistance (LPIR) score is a composite of six lipoprotein parameters measured by nuclear magnetic resonance spectroscopy that reflects the lipoprotein derangements of insulin resistance, which may be apparent months or years ... Lipoprotein insulin resistance measurement predicts future diabetes risk - Healio More...	nmrlearner	Online News	0	04-22-2016 08:45 PM
[NMR paper] A robust algorithm for optimizing protein structures with NMR chemical shifts. A robust algorithm for optimizing protein structures with NMR chemical shifts. Related Articles A robust algorithm for optimizing protein structures with NMR chemical shifts. J Biomol NMR. 2015 Sep 7; Authors: Berjanskii M, Arndt D, Liang Y, Wishart DS Abstract Over the past decade, a number of methods have been developed to determine the approximate structure of proteins using minimal NMR experimental information such as chemical shifts alone, sparse NOEs alone or a combination of comparative modeling data and chemical shifts....	nmrlearner	Journal club	0	09-09-2015 11:49 AM
A robust algorithm for optimizing protein structures with NMR chemical shifts A robust algorithm for optimizing protein structures with NMR chemical shifts Abstract Over the past decade, a number of methods have been developed to determine the approximate structure of proteins using minimal NMR experimental information such as chemical shifts alone, sparse NOEs alone or a combination of comparative modeling data and chemical shifts. However, there have been relatively few methods that allow these approximate models to be substantively refined or improved using the available NMR chemical shift data. Here, we present a novel...	nmrlearner	Journal club	0	09-08-2015 08:51 AM
Rice University Researchers' New Integrated Approach Predicts Structural ... - BioNews Texas <img alt="" height="1" width="1" /> Rice University Researchers' New Integrated Approach Predicts Structural ... BioNews Texas The most common methods for protein structural analysis currently are X-ray crystallography and nuclear magnetic resonance spectroscopy (NMR), however, these do not provide information about how proteins change their forms from native to functional ... Rice University Researchers' New Integrated Approach Predicts Structural ... - BioNews Texas More...	nmrlearner	Online News	0	12-09-2013 03:29 PM
[NMR paper] Structure prediction of protein complexes by an NMR-based protein docking algorithm. Structure prediction of protein complexes by an NMR-based protein docking algorithm. Related Articles Structure prediction of protein complexes by an NMR-based protein docking algorithm. J Biomol NMR. 2001 May;20(1):15-21 Authors: Kohlbache O, Burchardt A, Moll A, Hildebrandt A, Bayer P, Lenhof HP Protein docking algorithms can be used to study the driving forces and reaction mechanisms of docking processes. They are also able to speed up the lengthy process of experimental structure elucidation of protein complexes by proposing potential...	nmrlearner	Journal club	0	11-19-2010 08:32 PM
[NMR paper] GENFOLD: a genetic algorithm for folding protein structures using NMR restraints. GENFOLD: a genetic algorithm for folding protein structures using NMR restraints. Related Articles GENFOLD: a genetic algorithm for folding protein structures using NMR restraints. Protein Sci. 1998 Feb;7(2):491-9 Authors: Bayley MJ, Jones G, Willett P, Williamson MP We report the development and validation of the program GENFOLD, a genetic algorithm that calculates protein structures using restraints obtained from NMR, such as distances derived from nuclear Overhauser effects, and dihedral angles derived from coupling constants. The program...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[Stan NMR blog] A free tool predicts vicinal J's A free tool predicts vicinal J's The handy MestReJ utility from Mestrelab incorporates all Karplus-like rules More...	nmrlearner	News from NMR blogs	0	08-21-2010 05:42 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off