BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > Online News
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-28-2023, 03:40 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default 21st Century Technologies: Protein Folding AI (AlphaFold) - CityLife

21st Century Technologies: Protein Folding AI (AlphaFold) - CityLife

21st Century Technologies: Protein Folding AI (AlphaFold) CityLife Read here
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
AI Program AlphaFold Has Cracked Science's Problem With Protein - Junkee
AI Program AlphaFold Has Cracked Science's Problem With Protein Junkee AI Program AlphaFold Has Cracked Science's Problem With Protein - Junkee More...
nmrlearner Online News 0 08-09-2022 01:50 PM
[NMR paper] AlphaFold 2 and NMR Spectroscopy: Partners to Understand Protein Structure, Dynamics and Function
AlphaFold 2 and NMR Spectroscopy: Partners to Understand Protein Structure, Dynamics and Function The artificial intelligence program AlphaFold 2 is revolutionizing the field of protein structure determination as it accurately predicts the 3D structure of two thirds of the human proteome. Its predictions can be used directly as structural models or indirectly as aids for experimental structure determination using X-ray crystallography, CryoEM or NMR spectroscopy. Nevertheless, AlphaFold 2 can neither afford insight into how proteins fold, nor can it determine protein stability or...
nmrlearner Journal club 0 06-03-2022 07:40 PM
[NMR paper] The accuracy of protein structures in solution determined by AlphaFold and NMR
The accuracy of protein structures in solution determined by AlphaFold and NMR AlphaFoldn the recent Critical Assessment of Structure Prediction (CASP) competition, AlphaFold2 performed outstandingly. Its worst predictions were for nuclear magnetic resonance (NMR) structures, which has two alternative explanations: either the NMR structures were poor, implying that Alpha-Fold may be more accurate than NMR, or there is a genuine difference between crystal and solution structures. Here, we use the program Accuracy of NMR Structures Using RCI and Rigidity (ANSURR), which... More...
nmrlearner Journal club 0 05-11-2022 05:44 AM
Read the paper: Highly accurate protein structure prediction with AlphaFold - Nature.com
Read the paper: Highly accurate protein structure prediction with AlphaFold - Nature.com Read the paper: Highly accurate protein structure prediction with AlphaFold Nature.com Read here
nmrlearner Online News 0 08-20-2021 11:06 AM
AlphaFold: Artificial Intelligence Platform Towards Calculation of Protein Structures - NewsClick
AlphaFold: Artificial Intelligence Platform Towards Calculation of Protein Structures - NewsClick AlphaFold: Artificial Intelligence Platform Towards Calculation of Protein Structures NewsClick Read here
nmrlearner Online News 0 12-04-2020 03:46 PM
AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com
AlphaFold Algorithm Predicts COVID-19 Protein Structures InfoQ.com AlphaFold Algorithm Predicts COVID-19 Protein Structures - InfoQ.com More...
nmrlearner Online News 0 04-01-2020 12:01 AM
Systems-level Thinking Helps to Address Protein Folding - Institute for Ethics and Emerging Technologies
Systems-level Thinking Helps to Address Protein Folding - Institute for Ethics and Emerging Technologies <img alt="" height="1" width="1" /> Systems-level Thinking Helps to Address Protein Folding Institute for Ethics and Emerging Technologies There has been much technological advance in determining the static and dynamic features of protein structures, including in X-ray crystallography, NMR (nuclear magnetic resonance spectroscopy), cryo-electron microscopy, small-angle X-ray scattering ... Read here
nmrlearner Online News 0 01-24-2014 10:47 AM
Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century
Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century Celebrating its 20th anniversary in 2011, the Journal of Biomolecular NMR looks forward to the second decade of the 21st century Content Type Journal Article DOI 10.1007/s10858-010-9466-0 Authors
nmrlearner Journal club 0 12-31-2010 08:38 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 01:12 AM.


Map