NMR thesis NMR Studies of Cooperativity in Hemoglobin

		BioNMR > Educational resources > NMR theses
[NMR thesis] NMR Studies of Cooperativity in Hemoglobin

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-12-2020, 06:54 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,776

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Studies of Cooperativity in Hemoglobin

NMR Studies of Cooperativity in Hemoglobin

Adler, George (1980) NMR Studies of Cooperativity in Hemoglobin. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/089e-bj69. https://resolver.caltech.edu/Caltech...2020-012735380

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Engineering Order and Cooperativity in a Disordered Protein Engineering Order and Cooperativity in a Disordered Protein https://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.9b00182/20190430/images/medium/bi-2019-00182k_0001.gif Biochemistry DOI: 10.1021/acs.biochem.9b00182 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/KFOtQC1Ujw8 More...	nmrlearner	Journal club	0	05-01-2019 08:17 AM
Using High Pressure NMR to Study Folding Cooperativity and Kinetics of Protein L9 Using High Pressure NMR to Study Folding Cooperativity and Kinetics of Protein L9 Publication date: 3 February 2017 Source:Biophysical Journal, Volume 112, Issue 3, Supplement 1</br> Author(s): Yi Zhang, Soichiro Kitazawa, Ivan Peran, Natalie Stenzoski, Scott McCallum, Daniel Raleigh, Catherine Royer</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	02-03-2017 09:55 PM
[NMR paper] NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformation NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformational heterogeneity and binding. Related Articles NMR structure of the alpha-hemoglobin stabilizing protein: insights into conformational heterogeneity and binding. J Biol Chem. 2004 Aug 13;279(33):34963-70 Authors: Santiveri CM, Pérez-Cañadillas JM, Vadivelu MK, Allen MD, Rutherford TJ, Watkins NA, Bycroft M The structure of alpha-hemoglobin stabilizing protein (AHSP), a molecular chaperone for free alpha-hemoglobin, has been determined using NMR spectroscopy....	nmrlearner	Journal club	0	11-24-2010 09:51 PM
[NMR paper] NMR study of the sites of human hemoglobin acetylated by aspirin. NMR study of the sites of human hemoglobin acetylated by aspirin. Related Articles NMR study of the sites of human hemoglobin acetylated by aspirin. Biochim Biophys Acta. 1999 Jul 13;1432(2):333-49 Authors: Xu AS, Macdonald JM, Labotka RJ, London RE Acetylation of hemoglobin by aspirin and other acetylating agents has been used to generate hemoglobin analogs with altered structural and functional properties, and may prove useful in the treatment of sickle cell disease. We have studied the acetylation of human hemoglobin using acetylsalicylic...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[NMR paper] NMR studies of cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgar NMR studies of cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles NMR studies of cooperativity in the tetrahaem cytochrome c3 from Desulfovibrio vulgaris. Eur J Biochem. 1996 Nov 1;241(3):723-31 Authors: Turner DL, Salgueiro CA, Catarino T, Legall J, Xavier AV The thermodynamic properties of the Desulfovibrio vulgaris (Hildenborough) tetrahaem cytochrome c3...	nmrlearner	Journal club	0	08-22-2010 02:20 PM
[NMR paper] 1H-NMR investigation of the oxygenation of hemoglobin in intact human red blood cells 1H-NMR investigation of the oxygenation of hemoglobin in intact human red blood cells. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles 1H-NMR investigation of the oxygenation of hemoglobin in intact human red blood cells. Biophys J. 1995 Feb;68(2):681-93 Authors: Fetler BK, Simplaceanu V, Ho C Using improved selective excitation methods for protein nuclear...	nmrlearner	Journal club	0	08-22-2010 03:41 AM
[NMR paper] Metal complexes as allosteric effectors of human hemoglobin: an NMR study of the inte Metal complexes as allosteric effectors of human hemoglobin: an NMR study of the interaction of the gadolinium(III) bis(m-boroxyphenylamide)diethylenetriaminepentaacetic acid complex with human oxygenated and deoxygenated hemoglobin. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Metal complexes as allosteric effectors of human hemoglobin: an NMR study of the interaction of the...	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off