NMR thesis Metabolic engineering applications of in vivo [superscript 31]P and [superscript 13]C

		BioNMR > Educational resources > NMR theses
[NMR thesis] Metabolic engineering applications of in vivo [superscript 31]P and [superscript 13]C

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-27-2010, 01:45 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,731

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Metabolic engineering applications of in vivo [superscript 31]P and [superscript 13]C

Metabolic engineering applications of in vivo [superscript 31]P and [superscript 13]C NMR studies of Saccharomyces cerevisiae

Shanks, Jacqueline Vanni (1989) Metabolic engineering applications of in vivo [superscript 31]P and [superscript 13]C NMR studies of Saccharomyces cerevisiae. Dissertation (Ph.D.), California Institute of Technology. http://resolver.caltech.edu/CaltechE...1242007-080430

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Mutations in the Saccharomyces cerevisiae succinate dehydrogenase result in distinct metabolic phenotypes revealed through (1)H NMR-based metabolic footprinting. Mutations in the Saccharomyces cerevisiae succinate dehydrogenase result in distinct metabolic phenotypes revealed through (1)H NMR-based metabolic footprinting. Mutations in the Saccharomyces cerevisiae succinate dehydrogenase result in distinct metabolic phenotypes revealed through (1)H NMR-based metabolic footprinting. J Proteome Res. 2010 Dec 3;9(12):6729-39 Authors: Szeto SS, Reinke SN, Sykes BD, Lemire BD Metabolomics is a powerful method of examining the intricate connections between mutations, metabolism, and disease. Metabolic...	nmrlearner	Journal club	0	05-25-2011 07:01 PM
[NMR tweet] Nuclear Magnetic Resonance (NMR) Logging Principles and Applications http://dlvr.it/J2Jjz #Engineering Nuclear Magnetic Resonance (NMR) Logging Principles and Applications http://dlvr.it/J2Jjz #Engineering Published by get_freebooks (Get Free Books) on 2011-03-02T11:51:06Z Source: Twitter	nmrlearner	Twitter NMR	0	03-02-2011 11:54 AM
In Vivo NMR Metabolic Profiling of Fabrea salina Reveals Sequential Defense Mechanisms against Ultraviolet Radiation. In Vivo NMR Metabolic Profiling of Fabrea salina Reveals Sequential Defense Mechanisms against Ultraviolet Radiation. In Vivo NMR Metabolic Profiling of Fabrea salina Reveals Sequential Defense Mechanisms against Ultraviolet Radiation. Biophys J. 2011 Jan 5;100(1):215-24 Authors: Marangoni R, Paris D, Melck D, Fulgentini L, Colombetti G, Motta A Fabrea salina is a hypersaline ciliate that is known to be among the strongest ultraviolet (UV)-resistant microorganisms; however, the molecular mechanisms of this resistance are almost unknown. By means...	nmrlearner	Journal club	0	12-31-2010 07:03 PM
[Stan NMR blog] Mercury in-vivo imaging? Mercury in-vivo imaging? Answer to a query about the feasibility of 199Hg MRI Source: Stan blog library	nmrlearner	News from NMR blogs	0	12-21-2010 02:14 AM
[NMR tweet] Is it Possible to Extract Metabolic Pathway Information from In Vivo H Nuclear Magnet Is it Possible to Extract Metabolic Pathway Information from In Vivo H Nuclear Magnetic Resonance Spectroscopy Data? - http://goo.gl/tPPb Published by abhishektiwari (Abhishek Tiwari) on 2010-10-17T12:00:12Z Source: Twitter	nmrlearner	Twitter NMR	0	10-17-2010 12:00 PM
[NMR thesis] Band 3 structure and function : [superscript]35 C1 NMR and topographical investigatio Band 3 structure and function : 35 C1 NMR and topographical investigations Kanes, Katherine J. (1989) Band 3 structure and function : 35 C1 NMR and topographical investigations. Dissertation (Ph.D.), California Institute of Technology. http://resolver.caltech.edu/CaltechETD:etd-05302007-081241 More...	nmrlearner	NMR theses	0	08-27-2010 01:45 AM
[NMR tweet] Is it Possible to Extract Brain Metabolic Pathways Information from In Vivo H Nuclear Is it Possible to Extract Brain Metabolic Pathways Information from In Vivo H Nuclear Magnetic Resonance Spectroscopy ? http://bit.ly/9fUMgB Published by PhysicsPaper (New Physics Papers) on 2010-08-17T02:45:59Z Source: Twitter	nmrlearner	Twitter NMR	0	08-16-2010 11:59 PM
In vivo protein NMR assignments by PR-NMR Multidimensional NMR Spectroscopy for Protein Characterization and Assignment inside Cells Patrick N. Reardon and Leonard D. Spicer* Departments of Biochemistry and Radiology, Duke University Medical Center, Durham, North Carolina 27710 J. Am. Chem. Soc., 127 (31), 10848 -10849, 2005. http://pubs.acs.org/isubscribe/journals/jacsat/127/i31/figures/ja053145kn00001.gif Abstract: High-field, heteronuclear NMR spectroscopy of biological macromolecules in native cellular environments is limited by the low concentrations present and the long data acquisition times needed for the...	nmrlearner	Journal club	0	08-03-2005 07:29 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off