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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 05-20-2005, 05:52 AM
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matNMR, a good program for analysis of 1D and 2D spectra, has now a new color scheme (to address "the spontaneous blindness" issue) as well as many bug fixes and functionality improvements. The latest version of matNMR was released on May 5th, 2005.

Read introductory information about matNMR from its website below.


MatNMR is more than a static program that can be used only for processing data. It offers a wide variety of commonly used processing techniques for 1D and 2D spectra and combines these with the powerful graphical and numerical possibilities of MATLAB. Basically the concept of matNMR is that the user can do what ever he likes at any time. So without ever losing the capabilities that MATLAB has to offer or crashing matNMR.
If you know nothing about MATLAB, that's fine because it is not needed to operate matNMR.
If you want to use your own functions, change plots manually, manipulate matrices while still having all matNMR windows opened, that's also fine!
Because the most important word when talking about matNMR is: Flexibility.

Here is just a selection of what is supported in version 2.5 and higher :

MatNMR is completely GUI!
Full processing capabilities for 1D and 2D spectra (real, TPPI, STATES, (whole) echo)
Several filters to read in data from various types of spectrometers
Semi-automatic and manual Baseline corrections for 1D and 2D spectra
Two types of linear prediction for 1D and 2D spectra
Shearing transformation for 2D spectra in time and frequency domain
Symmetrizing of 2D spectra
Peak picking in 2D spectra
Peak Fitting of (arrays of) 1D spectra
T1 Fitting (arbitrary exponential functions)
A wide variety of functions for creating (multiple) 2D contour, 3D mesh plots, stack plots and raster plots
Drop-down menus for easy manipulating of plots
Easy printing of plots

And what about this :
A Processing history is recorded during processing
Full reprocessing capabilities from the processing history
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