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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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  #1  
Old 08-17-2004, 04:21 PM
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Default Answered: how to you determine the quantity of an organic molecule by its NMR spectra?

quantity , as in how much? with the its NMR spectra information
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You need to have a calibration curve or at least a comparison.The area of a peak (the integration) in NMR is quantitative, that is, the more sample you have, the bigger the are would be. just like how the area of signal of 1 proton is smaller than the signal of 2 proton.So you just have to compare the the integration of a specific peak of your sample to the standard or to the standard calibration curve"The most important fundamental relation of qNMR is that the signal response (integrated signal area) Ix in a spectrum is directly proportional to the number nuclei Nx generating the corresponding resonance line:Ix = KsNxwith Ks as a spectrometer constant"Journal of Pharmaceutical and Biomedical Analysis 38 (2005) 813–823

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Old 08-17-2004, 04:21 PM
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Default how to you determine the quantity of an organic molecule by its NMR spectra?

You need to have a calibration curve or at least a comparison.The area of a peak (the integration) in NMR is quantitative, that is, the more sample you have, the bigger the are would be. just like how the area of signal of 1 proton is smaller than the signal of 2 proton.So you just have to compare the the integration of a specific peak of your sample to the standard or to the standard calibration curve"The most important fundamental relation of qNMR is that the signal response (integrated signal area) Ix in a spectrum is directly proportional to the number nuclei Nx generating the corresponding resonance line:Ix = KsNxwith Ks as a spectrometer constant"Journal of Pharmaceutical and Biomedical Analysis 38 (2005) 813–823
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Old 08-18-2004, 12:21 AM
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Default how to you determine the quantity of an organic molecule by its NMR spectra?

Proton (H) NMR and Carbon NMR can roughly tell you the number of hydrogens and carbons in the compound but if the compound has symmetry all the hydrogens and carbons will not show up. The only way to find the actual quantity such as mass of the compound is through mass spec
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Old 08-18-2004, 08:21 AM
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Default how to you determine the quantity of an organic molecule by its NMR spectra?

I think you can only determine the quantity by using an internal standard in your NMR sample. You need to put a known quantity of a standard in, and then you can compare the integral values of your known standard to your unknown molecule.(integral value of standard proton) / (integral value of unknown proton) = (# of moles of standard) / (# of moles of the unknown)Using this equation and plugging in the integral values of one standard proton, one unknown proton, and the number of moles of standard will tell you the number of moles of unknown in the solution.
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