BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > NMR Questions and Answers
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rating: Thread Rating: 1 votes, 5.00 average. Display Modes
  #1  
Old 10-24-2009, 09:40 AM
Junior Member
 
Join Date: Oct 2009
Posts: 2
Points: 26, Level: 1
Points: 26, Level: 1 Points: 26, Level: 1 Points: 26, Level: 1
Level up: 52%, 24 Points needed
Level up: 52% Level up: 52% Level up: 52%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 0
NMR Points: 26
Downloads: 0
Uploads: 0
Provided Answers: 1
Default Answered: alignment in a magnetic field

hi all,

I have a general question about alignment in a magnetic field.
For me, alignment in alignment media is easier to grasp because of interactions that I am familiar with as a chemist.

But, whats the principle behind molecules that align in a magnetic field?
There are a lot of examples like cyanometmyoglobin (from the Prestegard paper) where paramagnetic susceptibility plays a role. Thats understandable from my side.
But what about for instance short DNA dimers (helices), collagen gels or bacteriophages?
I could not really find a nice (clear to me) explanation, why these molecules align...

Does anyone of you knows more about it?
thanx a lot!
Hydrazin
Reply With Quote


1 out of 1 members found this post helpful. Did you find this post helpful? Yes | No
Best Answer - Posted by gabrielc
Elongated molecules like DNA helices, bacteriophage etc. have intrinsic large magnetic susceptibility anisotropies which aligns them in magnetic fields (similar to magnetic dipoles). Check out papers from the 80s by A. A. Bothner-By for more details.

  #2  
Old 09-23-2010, 06:13 PM
Junior Member
 
Join Date: Sep 2010
Posts: 2
Points: 14, Level: 1
Points: 14, Level: 1 Points: 14, Level: 1 Points: 14, Level: 1
Level up: 27%, 36 Points needed
Level up: 27% Level up: 27% Level up: 27%
Activity: 0%
Activity: 0% Activity: 0% Activity: 0%
NMR Credits: 100
NMR Points: 14
Downloads: 0
Uploads: 0
Provided Answers: 1
Default

Elongated molecules like DNA helices, bacteriophage etc. have intrinsic large magnetic susceptibility anisotropies which aligns them in magnetic fields (similar to magnetic dipoles). Check out papers from the 80s by A. A. Bothner-By for more details.
Reply With Quote


1 out of 1 members found this post helpful. Did you find this post helpful? Yes | No
Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR tweet] 10 Questions for Biophysical Chemist: Wendy Shaw: WS: Nuclear Magnetic Resonance in PNNL's High-Field Magnetic R... http://bit.ly/kE1SLS
10 Questions for Biophysical Chemist: Wendy Shaw: WS: Nuclear Magnetic Resonance in PNNL's High-Field Magnetic R... http://bit.ly/kE1SLS Published by Sun_raven (sun raven) on 2011-05-12T21:44:02Z Source: Twitter
nmrlearner Twitter NMR 0 05-12-2011 09:50 PM
[NMR tweet] 10 Questions for Biophysical Chemist: Wendy Shaw: WS: Nuclear Magnetic Resonance in PNNL's High-Field Magnetic R... http://bit.ly/kE1SLS
10 Questions for Biophysical Chemist: Wendy Shaw: WS: Nuclear Magnetic Resonance in PNNL's High-Field Magnetic R... http://bit.ly/kE1SLS Published by Sun_raven78 (Raven) on 2011-05-12T21:44:01Z Source: Twitter
nmrlearner Twitter NMR 0 05-12-2011 09:50 PM
[NMR tweet] Oxford Instruments Launches GeoSpec2 at SPWLA: ... high magnetic field environments, nuclear magnetic resonance,... http://bit.ly/hM7lmI
Oxford Instruments Launches GeoSpec2 at SPWLA: ... high magnetic field environments, nuclear magnetic resonance,... http://bit.ly/hM7lmI Published by Sun_raven78 (Raven) on 2011-04-19T18:35:06Z Source: Twitter
nmrlearner Twitter NMR 0 04-19-2011 06:42 PM
[NMR tweet] Oxford Instruments Launches GeoSpec2 at SPWLA: ... high magnetic field environments, nuclear magnetic resonance,... http://bit.ly/hM7lmI
Oxford Instruments Launches GeoSpec2 at SPWLA: ... high magnetic field environments, nuclear magnetic resonance,... http://bit.ly/hM7lmI Published by Sun_raven (sun raven) on 2011-04-19T18:35:06Z Source: Twitter
nmrlearner Twitter NMR 0 04-19-2011 06:42 PM
[NMR tweet] http://www.pulist.net/field-guide-to-spectroscopy-spie-vol-fg08.html #nuclear #magnetic #resonance #approximation Field Guide to Spectro
http://www.pulist.net/field-guide-to-spectroscopy-spie-vol-fg08.html #nuclear #magnetic #resonance #approximation Field Guide to Spectro Published by pubooks (Joel Michal) on 2011-03-10T12:44:15Z Source: Twitter
nmrlearner Twitter NMR 0 03-10-2011 12:52 PM
[NMR analysis blog] Alignment of NMR spectra – Part IV: Advanced Alignment
Alignment of NMR spectra – Part IV: Advanced Alignment Previous posts on this series: Alignment of NMR spectra – Part I: The problem Alignment of NMR spectra – Part II: Binning / Bucketing Alignment of NMR spectra – Part III: Global Alignment As I mentioned in my previous post, simple alignment based on shifting or referencing the whole spectrum is not enough in cases where there are different local chemical shift fluctuations. Resorting back to the synthetic data set used in the previous posts, let me introduce a semi-automatic method designed specifically to align spectra having...
nmrlearner News from NMR blogs 0 02-07-2011 07:53 PM
[NMR analysis blog] Alignment of NMR spectra – Part III: Global Alignment
Alignment of NMR spectra – Part III: Global Alignment Previous posts on this series: Alignment of NMR spectra – Part I: The problem Alignment of NMR spectra – Part II: Binning / Bucketing We have seen that binning helps in minimizing, for example, the effect of pH-induced fluctuations in chemical shift so that, in the field of NMR-based metabonomics studies, ensuring that signals for a given metabolite appear at the same location in all spectra. One evident disadvantage of binning is that it greatly reduces the spectral resolution (e.g. in a 500 MHz instrument, a typical 64 Kb...
nmrlearner News from NMR blogs 0 02-03-2011 06:51 PM
Triton X-100 as the “Short-Chain Lipid” Improves the Magnetic Alignment and Stability
Triton X-100 as the “Short-Chain Lipid” Improves the Magnetic Alignment and Stability of Membrane Proteins in Phosphatidylcholine Bilayers for Oriented-Sample Solid-State NMR Spectroscopy Sang Ho Park et al http://pubs.acs.org//appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja1055565/aop/images/medium/ja-2010-055565_0003.gifJournal of the American Chemical Society, Volume 0, Issue 0, Articles ASAP (As Soon As Publishable). Source: Journal of the American Chemical Society
nmrlearner Journal club 0 08-25-2010 03:51 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:02 AM.


Map