NMR images Table 1. Definition of dihedral angles, the expected dihedral angle ...

		BioNMR > NMR community > NMR pictures
[NMR images] Table 1. Definition of dihedral angles, the expected dihedral angle ...

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-18-2013, 07:21 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Table 1. Definition of dihedral angles, the expected dihedral angle ...

biology.kenyon.edu
18/06/2013 7:23:35 AM GMT
Table 1. Definition of dihedral angles, the expected dihedral angle ...
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone ?, ? and side-chain ?(1) and ?(2) dihedral angles. Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone ?, ? and side-chain ?(1) and ?(2) dihedral angles. Related Articles Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone ?, ? and side-chain ?(1) and ?(2) dihedral angles. J Chem Theory Comput. 2012 Sep 11;8(9):3257-3273 Authors: Best RB, Zhu X, Shim J, Lopes PE, Mittal J, Feig M, Mackerell AD Abstract While the quality of the current CHARMM22/CMAP additive force field for...	nmrlearner	Journal club	0	02-03-2013 10:19 AM
Dihedral angle definition for proteins Dihedral angle definition for proteins This webpage lists the group of atoms that are uder every side-chain dihedral angle for proteins. More...	nmrlearner	General	0	05-27-2011 10:44 PM
[NMR paper] Automated NMR determination of protein backbone dihedral angles from cross-correlated Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation. Related Articles Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation. J Biomol NMR. 2002 Apr;22(4):349-63 Authors: Kloiber K, Schüler W, Konrat R The simultaneous interpretation of a suite of dipole-dipole and dipole-CSA cross-correlation rates involving the backbone nuclei 13Calpha, 1Halpha, 13CO, 15N and 1HN can be used to resolve the ambiguities associated with each individual...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] HYPER: a hierarchical algorithm for automatic determination of protein dihedral-angle HYPER: a hierarchical algorithm for automatic determination of protein dihedral-angle constraints and stereospecific C beta H2 resonance assignments from NMR data. Related Articles HYPER: a hierarchical algorithm for automatic determination of protein dihedral-angle constraints and stereospecific C beta H2 resonance assignments from NMR data. J Biomol NMR. 1999 Nov;15(3):251-64 Authors: Tejero R, Monleon D, Celda B, Powers R, Montelione GT A new computer program, HYPER, has been developed for automated analysis of protein dihedral angle values...	nmrlearner	Journal club	0	11-18-2010 08:31 PM
[CNS Yahoo group] ncs definition ncs definition hi I am refining a protein/DNA complex. I have 4 dimers. I want to define one dimer as a NCS unit. I have labelled each molecule in the dimer with different More...	nmrlearner	News from other NMR forums	0	08-21-2010 03:26 PM
Precise structural determination of weakly binding peptides by utilizing dihedral ang Abstract Structural determination of target-bound conformations of peptides is of primary importance for the optimization of peptide ligands and peptideâ??mimetic design. In the structural determination of weakly binding ligands, transferred nuclear Overhauser effect (TrNOE) methods have been widely used. However, not many distance constraints can be obtained from small peptide ligands by TrNOE, especially for peptides bound to a target molecule in an extended conformation. Therefore, for precise structural determination of weakly binding peptides, additional structural constraints are...	nmrlearner	Journal club	0	08-14-2010 04:19 AM
NOESY signals and chi2 dihedral angle Hello out there! I have a question about the intensity of NOESY correlation signals and the chi2 dihedral angle. The more intense the NOE signals are, the closer the distance between the two nuclei, right? So, if two beta protons have close to the same NOE intensity on the NOESY, which can be described as medium intensity, what does that say about the conformation around the chi2 dihedral angle.........?	davis	NMR Questions and Answers	0	02-16-2010 04:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off