NMR images Structural Biochemistry/Proteins/NMR Spectroscopy - Wikibooks, open ...

		BioNMR > NMR community > NMR pictures
[NMR images] Structural Biochemistry/Proteins/NMR Spectroscopy - Wikibooks, open ...

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-14-2014, 05:47 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,697

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Structural Biochemistry/Proteins/NMR Spectroscopy - Wikibooks, open ...

en.wikibooks.org
14/02/2014 5:48:03 PM GMT
Structural Biochemistry/Proteins/NMR Spectroscopy - Wikibooks, open ...
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Combined use of optical spectroscopy and computational methods to study the binding and the photoinduced conformational modification of proteins when NMR and x-ray structural determinations are not an option. Combined use of optical spectroscopy and computational methods to study the binding and the photoinduced conformational modification of proteins when NMR and x-ray structural determinations are not an option. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Combined use of optical spectroscopy and computational methods to study the binding and the photoinduced conformational modification of proteins when NMR and x-ray structural determinations are not an option. Adv Protein Chem...	nmrlearner	Journal club	0	09-11-2013 09:15 PM
[NMR paper] Structural characterization of intrinsically disordered proteins by NMR spectroscopy. Structural characterization of intrinsically disordered proteins by NMR spectroscopy. Structural characterization of intrinsically disordered proteins by NMR spectroscopy. Molecules. 2013;18(9):10802-28 Authors: Kosol S, Contreras-Martos S, Cedeño C, Tompa P Abstract Recent advances in NMR methodology and techniques allow the structural investigation of biomolecules of increasing size with atomic resolution. NMR spectroscopy is especially well-suited for the study of intrinsically disordered proteins (IDPs) and intrinsically disordered...	nmrlearner	Journal club	0	09-07-2013 09:54 PM
NMR advance brings proteins into the open - spectroscopyNOW.com <img alt="" height="1" width="1" /> NMR advance brings proteins into the open spectroscopyNOW.com A key protein interaction, common across all forms of life, had eluded scientists' observation until a team of researchers cracked the case by combining data from four different techniques of nuclear magnetic resonance spectroscopy. Providence, R.I ... NMR advance brings proteins into the open - spectroscopyNOW.com More...	nmrlearner	Online News	0	06-26-2013 09:39 AM
NMR Advance Brings Proteins Into the Open - Science Daily (press release) NMR Advance Brings Proteins Into the Open - Science Daily (press release) <img alt="" height="1" width="1" /> NMR Advance Brings Proteins Into the Open Science Daily (press release) NMR is capable of sensing the interactions and kinetics of protein handshakes as they occur, but in some cases any single technique can provide only hints and whispers of what's going on. Brown University biologist Nicolas Fawzi, who was a postdoctoral ... and more » Read here	nmrlearner	Online News	0	06-26-2013 09:39 AM
NMR advance brings proteins into the open NMR advance brings proteins into the open http://www.spectroscopynow.com/common/images/thumbnails/13f7bf89dc5.jpg Read more at at Spectroscopynow.com	nmrlearner	Online News	0	06-26-2013 09:39 AM
[NMR images] en.wikibooks.org http://upload.wikimedia.org/wikibooks/en/0/0f/Table_HNMR.jpg http://en.wikibooks.org/wiki/Structural_Biochemistry/Proteins/NMR_Spectroscopy 21/04/2013 3:30:43 AM GMT en.wikibooks.org More...	nmrlearner	NMR pictures	0	04-28-2013 05:55 PM
Postdoctoral positions in Biochemistry and Structural Biology Postdoctoral positions in Biochemistry and Structural Biology Two postdoc positions are currently available in the laboratory of Dr. Jamil Saad at the University of Alabama at Birmingham (UAB). Our research program is aimed at understanding the precise molecular mechanism of how retroviral proteins interact with cellular factors during the virus replication cycle. We use a set of biochemical, biophysical and structural biology (mainly NMR and occasionally X-ray) tools to characterize key protein-protein and protein-lipid interactions critical for vi… More...	nmrlearner	Job marketplace	0	08-19-2010 02:44 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off