NMR images Protein Production, Modeling & Structural Proteomics Core Facility

		BioNMR > NMR community > NMR pictures
[NMR images] Protein Production, Modeling & Structural Proteomics Core Facility

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-22-2014, 03:21 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,779

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein Production, Modeling & Structural Proteomics Core Facility

22/04/2014 3:22:09 AM GMT
Protein Production, Modeling & Structural Proteomics Core Facility
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR/ Core Instrument Facility Manager \| Johns Hopkins University, Chemistry Department NMR/ Core Instrument Facility Manager \| Johns Hopkins University, Chemistry Department US - MD - Baltimore, - PhD in Chemistry, Biochemistry, or related discipline.- At least 3-5 years of experience in NMR spectroscopy is preferred and experience with electronics and computer programming is highly desir More...	nmrlearner	Job marketplace	0	02-08-2014 04:47 AM
NMR Core Facility Manager \| Scripps Florida NMR Core Facility Manager \| Scripps Florida US - Jupiter, Florida, A Ph.D. with background in Chemistry, Biochemistry or related disciplines and a minimum 5 years experience with multi-dimensional NMR applications to small molecules is required. Experience managin More...	nmrlearner	Job marketplace	0	05-16-2013 04:59 AM
NMR Core Facility, Mgr (FL) Job NMR Core Facility, Mgr (FL) Job Position Summary: The selected candidate will oversee the daily operation of the Nuclear Magnetic Resonance (NMR) Core Facility, with responsibilities ... floridajobs.scripps.edu/nmr-core-facility-mgr-fl/.../3392558 More...	nmrlearner	Job marketplace	0	08-23-2012 03:46 AM
NMR/ Core Instrument Facility Manager \| Johns Hopkins University NMR/ Core Instrument Facility Manager \| Johns Hopkins University US - MD - Baltimore, Department of Chemistry--Johns Hopkins University--Applications are sought from qualified candidates with a PhD degree who will oversee the operation of the Chemistry Department NMR and Core Instrume More...	nmrlearner	Job marketplace	0	12-13-2010 11:40 AM
[NMR paper] Cell-free protein production and labeling protocol for NMR-based structural proteomic Cell-free protein production and labeling protocol for NMR-based structural proteomics. Related Articles Cell-free protein production and labeling protocol for NMR-based structural proteomics. Nat Methods. 2004 Nov;1(2):149-53 Authors: Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL Structural proteomics requires robust, scalable methods. Here we describe a wheat germ cell-free platform for protein production that supports efficient NMR structural studies of eukaryotic proteins and offers advantages over cell-based methods....	nmrlearner	Journal club	0	11-24-2010 10:01 PM
[NMR paper] High-throughput screening of structural proteomics targets using NMR. High-throughput screening of structural proteomics targets using NMR. Related Articles High-throughput screening of structural proteomics targets using NMR. FEBS Lett. 2003 Sep 25;552(2-3):207-13 Authors: Galvão-Botton LM, Katsuyama AM, Guzzo CR, Almeida FC, Farah CS, Valente AP We applied a high-throughput strategy for the screening of targets for structural proteomics of Xanthomonas axonopodis pv citri. This strategy is based on the rapid (1)H-(15)N HSQC NMR analysis of bacterial lysates containing selectively (15)N-labelled heterologous...	nmrlearner	Journal club	0	11-24-2010 09:16 PM
[NMR paper] An NMR approach to structural proteomics. An NMR approach to structural proteomics. Related Articles An NMR approach to structural proteomics. Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1825-30 Authors: Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
NMR in structural proteomics and beyond. NMR in structural proteomics and beyond. Related Articles NMR in structural proteomics and beyond. Prog Nucl Magn Reson Spectrosc. 2010 Apr;56(3):247-66 Authors: Banci L, Bertini I, Luchinat C, Mori M	nmrlearner	Journal club	0	10-19-2010 04:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off