NMR images Protein NMR Spectroscopy

		BioNMR > NMR community > NMR pictures
[NMR images] Protein NMR Spectroscopy

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-16-2010, 05:51 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,780

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Protein NMR Spectroscopy

141.161.23.43
16/11/2010 5:52:22 PM GMT
Protein NMR Spectroscopy
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Biochemistry. 2011 Sep 26; Authors: Wang Q, Zhuravleva A, Gierasch LM Abstract Biology relies on functional interplay of proteins in the crowded and heterogeneous environment inside cells, and functional protein interactions are often weak and transient. Thus, methods are needed that preserve these interactions...	nmrlearner	Journal club	0	09-30-2011 06:00 AM
Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Exploring weak, transient protein-protein interactions in crowded in vivo environments by in-cell NMR spectroscopy. Biochemistry. 2011 Sep 26; Authors: Wang Q, Zhuravleva A, Gierasch LM Abstract Biology relies on functional interplay of proteins in the crowded and heterogeneous environment inside cells, and functional protein interactions are often weak and transient. Thus, methods are needed that preserve these...	nmrlearner	Journal club	0	09-30-2011 05:59 AM
[NMR images] Protein NMR Spectroscopy http://static.letsbuyit.com/filer/images/uk/products/original/213/53/fundamentals-of-protein-nmr-spectroscopy-focus-on-structural-biology-21353794.jpeg letsbuyit.co.uk 3/01/2011 10:22:04 AM GMT Protein NMR Spectroscopy More...	nmrlearner	NMR pictures	0	01-03-2011 10:20 AM
[NMR paper] Monitoring the effects of antagonists on protein-protein interactions with NMR spectroscopy. Monitoring the effects of antagonists on protein-protein interactions with NMR spectroscopy. Related Articles Monitoring the effects of antagonists on protein-protein interactions with NMR spectroscopy. J Am Chem Soc. 2005 Sep 28;127(38):13220-6 Authors: D'Silva L, Ozdowy P, Krajewski M, Rothweiler U, Singh M, Holak TA We describe an NMR method that directly monitors the influence of ligands on protein-protein interactions. For a two-protein interaction complex, the size of one component should be small enough (less than ca. 15 kDa) to provide...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Water-protein hydrogen exchange in the micro-crystalline protein crh as observed by solid state NMR spectroscopy. Water-protein hydrogen exchange in the micro-crystalline protein crh as observed by solid state NMR spectroscopy. Related Articles Water-protein hydrogen exchange in the micro-crystalline protein crh as observed by solid state NMR spectroscopy. J Biomol NMR. 2005 Jul;32(3):195-207 Authors: Böckmann A, Juy M, Bettler E, Emsley L, Galinier A, Penin F, Lesage A We report site-resolved observation of hydrogen exchange in the micro-crystalline protein Crh. Our approach is based on the use of proton T2' -selective 1H-13C-13C correlation spectra for...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] Fast mapping of protein-protein interfaces by NMR spectroscopy. Fast mapping of protein-protein interfaces by NMR spectroscopy. Related Articles Fast mapping of protein-protein interfaces by NMR spectroscopy. J Am Chem Soc. 2003 Nov 26;125(47):14250-1 Authors: Reese ML, Dötsch V Identifying the interface of protein complexes can represent a difficult task in structural biology. Here, we report a method for the fast mapping of interfaces of protein complexes by NMR without the need for the assignments of the proteins involved.	nmrlearner	Journal club	0	11-24-2010 09:16 PM
[NMR paper] Facile detection of protein-protein interactions by one-dimensional NMR spectroscopy. Facile detection of protein-protein interactions by one-dimensional NMR spectroscopy. Related Articles Facile detection of protein-protein interactions by one-dimensional NMR spectroscopy. Biochemistry. 2003 Mar 18;42(10):2774-80 Authors: Araç D, Murphy T, Rizo J Two methods for detecting protein-protein interactions in solution using one-dimensional (1D) NMR spectroscopy are described. Both methods rely on measurement of the intensity of the strongest methyl resonance (SMR), which for most proteins is observed at 0.8-0.9 ppm. The severe...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR images] Protein NMR Spectroscopy http://141.161.23.43/nmr/ubiq1.gif 141.161.23.43 13/11/2010 5:01:11 AM GMT Protein NMR Spectroscopy More...	nmrlearner	NMR pictures	0	11-16-2010 05:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off