[NMR paper] Exploring NMR methods as a tool to select suitable fluorescent nucleotide analogues.
Exploring NMR methods as a tool to select suitable fluorescent nucleotide analogues.
Exploring NMR methods as a tool to select suitable fluorescent nucleotide analogues.
Org Biomol Chem. 2013 Jul 11;
Authors: Groves P, Strzelecka-Kiliszek A, Sekrecka-Belniak A, Canales A, Jiménez-Barbero J, Bandorowicz-Pikula J, Pikula S, Javier Cañada F
Abstract
Fluorescent analogues provide important tools for biochemical/biophysical research. However, the analogues contain chemical modifications much larger than those known to affect...
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07-12-2013 06:01 PM
[NMR paper] A modified strategy for sequence specific assignment of protein NMR spectra based on
A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments.
Related Articles A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments.
J Biomol NMR. 2005 Feb;31(2):115-28
Authors: Schubert M, Labudde D, Leitner D, Oschkinat H, Schmieder P
The determination of the three-dimensional structure of a protein or the study of protein-ligand interactions requires the assignment of all relevant nuclei as an initial step....
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11-24-2010 11:14 PM
[NMR paper] A sequential HNCA NMR pulse sequence for protein backbone assignment.
A sequential HNCA NMR pulse sequence for protein backbone assignment.
Related Articles A sequential HNCA NMR pulse sequence for protein backbone assignment.
J Magn Reson. 2001 May;150(1):100-4
Authors: Meissner A, Sørensen OW
The conventional HNCA pulse sequence suffers from the ambiguity that it cannot distinguish inter- and intraresidue correlations because the one-bond and two-bond J(NC(alpha)) coupling constants are of similar magnitude. This paper presents a novel pulse sequence, sequential HNCA, that leads to a spectrum exhibiting...
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11-19-2010 08:32 PM
[NMR paper] A constraint reasoning system for automating sequence-specific resonance assignments
A constraint reasoning system for automating sequence-specific resonance assignments from multidimensional protein NMR spectra.
Related Articles A constraint reasoning system for automating sequence-specific resonance assignments from multidimensional protein NMR spectra.
Proc Int Conf Intell Syst Mol Biol. 1993;1:447-55
Authors: Zimmerman DE, Kulikowski CA, Montelione GT
AUTOASSIGN is a prototype expert system designed to aid in the determination of protein structure from nuclear magnetic resonance (NMR) measurements. In this paper we focus...
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08-21-2010 11:53 PM
Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH
Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH
Jochen Volk, Torsten Herrmann and Kurt Wüthrich
Journal of Biomolecular NMR; 2008; 41(3); pp 127 - 138
Abstract:
MATCH (Memetic Algorithm and Combinatorial Optimization Heuristics) is a new memetic algorithm for automated sequence-specific polypeptide backbone NMR assignment of proteins. MATCH employs local optimization for tracing partial sequence-specific assignments within a global, population-based search environment, where the simultaneous application of local and global optimization heuristics...
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