NMR images Membrane Proteins and Related Diseases

		BioNMR > NMR community > NMR pictures
[NMR images] Membrane Proteins and Related Diseases

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-31-2014, 01:57 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Membrane Proteins and Related Diseases

31/05/2014 1:57:49 PM GMT
Membrane Proteins and Related Diseases
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Structure determination of ?-helical membrane proteins by solution-state NMR: Emphasis on retinal proteins. Structure determination of ?-helical membrane proteins by solution-state NMR: Emphasis on retinal proteins. Structure determination of ?-helical membrane proteins by solution-state NMR: Emphasis on retinal proteins. Biochim Biophys Acta. 2013 Jul 2; Authors: Gautier A Abstract The biochemical processes of living cells involve a numerous series of reactions that work with exceptional specificity and efficiency. The tight control of this intricate reaction network stems from the architecture of the proteins that drive the chemical...	nmrlearner	Journal club	0	07-09-2013 02:47 PM
Dynamic nuclear polarization methods in solids and solutions to explore membrane proteins and membrane systems From The DNP-NMR Blog: Dynamic nuclear polarization methods in solids and solutions to explore membrane proteins and membrane systems Cheng, C.Y. and S. Han, Dynamic nuclear polarization methods in solids and solutions to explore membrane proteins and membrane systems. Annu Rev Phys Chem, 2013. 64(1): p. 507-32. http://www.ncbi.nlm.nih.gov/pubmed/23331309	nmrlearner	News from NMR blogs	0	07-08-2013 02:17 PM
Structure determination of ?–helical membrane proteins by solution-state NMR: Emphasis on retinal proteins Structure determination of ?–helical membrane proteins by solution-state NMR: Emphasis on retinal proteins Publication date: Available online 2 July 2013 Source:Biochimica et Biophysica Acta (BBA) - Bioenergetics</br> Author(s): Antoine Gautier</br> The biochemical processes of living cells involve a numerous series of reactions that work with exceptional specificity and efficiency. The tight control of this intricate reaction network stems from the architecture of the proteins that drive the chemical reactions and mediate protein–protein interactions. Indeed, the...	nmrlearner	Journal club	0	07-02-2013 09:44 AM
[NMR paper] NMR- and CD-Monitored Lipid-Binding Studies Suggest a General Role for the FATC Domain as Membrane Anchor of Phosphatidyl-Inositol-3 Kinase-Related Kinases (PIKKs). NMR- and CD-Monitored Lipid-Binding Studies Suggest a General Role for the FATC Domain as Membrane Anchor of Phosphatidyl-Inositol-3 Kinase-Related Kinases (PIKKs). Related Articles NMR- and CD-Monitored Lipid-Binding Studies Suggest a General Role for the FATC Domain as Membrane Anchor of Phosphatidyl-Inositol-3 Kinase-Related Kinases (PIKKs). J Biol Chem. 2013 May 13; Authors: Sommer LA, Schaad M, Dames SA Abstract The FATC domain is shared by all members of the family of phosphatidylinositol-3 kinase related kinases (PIKKs). It has been...	nmrlearner	Journal club	0	05-15-2013 03:12 PM
From the Micelle to the Membrane: Molecular Dynamics Simulations of Solution NMR Structures of Membrane Proteins From the Micelle to the Membrane: Molecular Dynamics Simulations of Solution NMR Structures of Membrane Proteins 29 January 2013 Publication year: 2013 Source:Biophysical Journal, Volume 104, Issue 2, Supplement 1</br> </br> </br> </br></br>	nmrlearner	Journal club	0	02-03-2013 10:13 AM
How Crowdfunding Could Help Cure Rare Diseases How Crowdfunding Could Help Cure Rare Diseases The Rare Genomics Institute is using a crowdfunding model to help treat the nearly 7,000 rare diseases that exist in the U.S. More...	nmrlearner	General	0	02-29-2012 10:32 PM
Investigator - Chemistry \| Novartis Institute for Tropical Diseases Pte Ltd Investigator - Chemistry \| Novartis Institute for Tropical Diseases Pte Ltd SGP - Biopolis, Singapore, You should have a Ph.D. in synthetic organic chemistry, preferably with 5 year?s relevant industry experience and should be familiar with standard characterization methods such as NMR, MS, and HPLC. More...	nmrlearner	Job marketplace	0	02-28-2012 09:40 PM
[NMR paper] How to prepare membrane proteins for solid-state NMR: A case study on the alpha-helical integral membrane protein diacylglycerol kinase from E. coli. How to prepare membrane proteins for solid-state NMR: A case study on the alpha-helical integral membrane protein diacylglycerol kinase from E. coli. Related Articles How to prepare membrane proteins for solid-state NMR: A case study on the alpha-helical integral membrane protein diacylglycerol kinase from E. coli. Chembiochem. 2005 Sep;6(9):1693-700 Authors: Lorch M, Faham S, Kaiser C, Weber I, Mason AJ, Bowie JU, Glaubitz C Several studies have demonstrated that it is viable to use microcrystalline preparations of water-soluble proteins as...	nmrlearner	Journal club	0	12-01-2010 06:56 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off