NMR images Let's go through the steps you should take to solve any NMR structure ...

		BioNMR > NMR community > NMR pictures
[NMR images] Let's go through the steps you should take to solve any NMR structure ...

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-18-2013, 07:57 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Let's go through the steps you should take to solve any NMR structure ...

www.mendelset.com
18/06/2013 7:23:35 AM GMT
Let's go through the steps you should take to solve any NMR structure ...
More...

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR images] Let's use steps similar those outlined in problem 662 to solve this ... http://50.57.82.128/sites/default/files/userfiles/48/uploaded_images/grignard%20q5.png www.mendelset.com 18/06/2013 7:23:35 AM GMT Let's use steps similar those outlined in problem 662 to solve this ... More...	nmrlearner	NMR pictures	0	06-18-2013 07:21 AM
[NMR images] Let's solve this NMR structure elucidation problem using steps similar ... http://50.57.82.128/sites/default/files/userfiles/48/uploaded_images/redox%20q5.png www.mendelset.com 18/06/2013 7:23:35 AM GMT Let's solve this NMR structure elucidation problem using steps similar ... More...	nmrlearner	NMR pictures	0	06-18-2013 07:21 AM
Researchers solve complete 3-D structure of E6 proteins in HPV 16 - News-Medical.net Researchers solve complete 3-D structure of E6 proteins in HPV 16 - News-Medical.net <img alt="" height="1" width="1" /> Researchers solve complete 3-D structure of E6 proteins in HPV 16 News-Medical.net Success depended on two factors: the development of methods for isolating protein E6 as well as the use of nuclear magnetic resonance (NMR) and crystallography techniques. Having dealt with various aggregation and purification problems, the researchers ... and more » Read here	nmrlearner	Online News	0	02-16-2013 05:53 AM
Solve Puzzles for Science \| Foldit Solve Puzzles for Science \| Foldit Foldit is a revolutionary new computer game enabling the users to contribute to important scientific research. More...	nmrlearner	General	0	10-26-2011 11:27 PM
In-cell NMR in E. coli to Monitor Maturation Steps of hSOD1. In-cell NMR in E. coli to Monitor Maturation Steps of hSOD1. In-cell NMR in E. coli to Monitor Maturation Steps of hSOD1. PLoS One. 2011;6(8):e23561 Authors: Banci L, Barbieri L, Bertini I, Cantini F, Luchinat E Abstract In-cell NMR allows characterizing the folding state of a protein as well as posttranslational events at molecular level, in the cellular context. Here, the initial maturation steps of human copper, zinc superoxide dismutase 1 are characterized in the E. coli cytoplasm by in-cell NMR: from the apo protein, which is...	nmrlearner	Journal club	0	09-03-2011 06:55 PM
[CNS Yahoo group] how to solve the cns installation problem how to solve the cns installation problem I tried to install cns 1.3 on fedora15 linux system but failed. When I followed the process to install cns 1.3 then test it, i got following error: %SETFPEPS More...	nmrlearner	News from other NMR forums	0	08-13-2011 02:50 PM
[NMR paper] Use of proline mutants to help solve the NMR solution structure of type III antifreez Use of proline mutants to help solve the NMR solution structure of type III antifreeze protein. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Use of proline mutants to help solve the NMR solution structure of type III antifreeze protein. Protein Sci. 1993 Sep;2(9):1411-28 Authors: Chao H, Davies PL, Sykes BD, Sönnichsen FD...	nmrlearner	Journal club	0	08-22-2010 03:01 AM
Dissecting the Microscopic Steps of the Cyclophilin A Enzymatic Cycle on the biologic Dissecting the Microscopic Steps of the Cyclophilin A Enzymatic Cycle on the biological substrate HIV-capsid by NMR. Related Articles Dissecting the Microscopic Steps of the Cyclophilin A Enzymatic Cycle on the biological substrate HIV-capsid by NMR. J Mol Biol. 2010 Aug 11; Authors: Bosco DA, Eisenmesser EZ, Clarkson MW, Wolf-Watz M, Labeikovsky W, Millet O, Kern D Peptidyl-prolyl isomerases (PPIases) are emerging as key regulators of many diverse biological processes. Elucidating the role of PPIase activity in vivo has been challenging because...	nmrlearner	Journal club	0	08-17-2010 01:53 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off