Proton NMR problems (2)

		BioNMR > Educational resources > NMR educational videos
Proton NMR problems (2)

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-18-2010, 01:38 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Proton NMR problems (2)

Proton NMR problems (2)

Proton NMR problems (2)

Organic chemistry: Proton NMR (nuclear magnetic resonance) spectroscopy problems This is a recording of a tutoring session, posted with the students' permission. These videos are offered on a "pay-what-you-like" basis. You can pay for the use of the videos at my website: www.freelance-teacher.com For a printable document containing the NMR table and problems discussed in this video series, go to my website. For a list of all the available video series, arranged in suggested viewing order, go to my website. For a playlist containing all the videos in this series, click here: www.youtube.com (1) Degrees of unsaturation (index of hydrogen deficiency). Survey of an NMR chemical shift table (2) Continued (3) A problem (4) Continued (5) Continued (6) A problem (7) Continued (8) Continued (9) Another problem (10) Continued (11) Another problem (12) Continued (13) Another problem (14) Continued (15) Another problem (16) Another problem (17) Continued (18) Another problem (19) Another problem (20) Continued
From: freelanceteach
Views: 2711

6 ratings
Time: 06:31 More in Education

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: sparky problems Re: sparky problems Thank you, it's working now. I never used that for a while, and the default is English, so never checked that. Thank you More...	nmrlearner	News from other NMR forums	0	02-23-2012 09:08 PM
[NMR Sparky Yahoo group] sparky problems sparky problems Hello, Dear Sparky friends, My name is Wen Chen, I'm a post-doc from Rensselaer Polytechnic Institute. I've been using sparky for a few years now. But today More...	nmrlearner	News from other NMR forums	0	02-23-2012 07:38 AM
NMR Detection of pH-Dependent Histidine–Water Proton Exchange Reveals the Conduction Mechanism of a Transmembrane Proton Channel NMR Detection of pH-Dependent Histidine–Water Proton Exchange Reveals the Conduction Mechanism of a Transmembrane Proton Channel Fanghao Hu, Klaus Schmidt-Rohr and Mei Hong http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2081185/aop/images/medium/ja-2011-081185_0008.gif Journal of the American Chemical Society DOI: 10.1021/ja2081185 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/C3pPoB5_PR8	nmrlearner	Journal club	0	10-22-2011 10:16 AM
[NMR paper] Direct refinement against proton-proton dipolar couplings in NMR structure determinat Direct refinement against proton-proton dipolar couplings in NMR structure determination of macromolecules. Related Articles Direct refinement against proton-proton dipolar couplings in NMR structure determination of macromolecules. J Magn Reson. 2000 Feb;142(2):393-6 Authors: Tjandra N, Marquardt J, Clore GM The computational tools necessary for making use of (1)H-(1)H dipolar couplings in macromolecular structure refinement are presented. Potentials are described for direct refinement against (1)H-(1)H dipolar couplings of known sign as well...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
Mechanisms of proton conduction and gating in influenza m2 proton channels from solid Mechanisms of proton conduction and gating in influenza m2 proton channels from solid-state NMR. Related Articles Mechanisms of proton conduction and gating in influenza m2 proton channels from solid-state NMR. Science. 2010 Oct 22;330(6003):505-8 Authors: Hu F, Luo W, Hong M The M2 protein of influenza viruses forms an acid-activated tetrameric proton channel. We used solid-state nuclear magnetic resonance spectroscopy to determine the structure and functional dynamics of the pH-sensing and proton-selective histidine-37 in M2 bound to a...	nmrlearner	Journal club	0	10-23-2010 05:48 PM
Proton NMR problems (1) Proton NMR problems (1) http://i.ytimg.com/vi/HevDzIgrNFE/default.jpg Proton NMR problems (1) Organic chemistry: Proton NMR spectroscopy (nuclear magnetic resonance) problems This is a recording of a tutoring session, posted with the students' permission. These videos are offered on a "pay-what-you-like" basis. You can pay for the use of the videos at my website: www.freelance-teacher.com For a printable document containing the NMR table and problems discussed in this video series, go to my website. For a list of all the available video series, arranged in suggested viewing order,...	nmrlearner	NMR educational videos	0	08-18-2010 01:38 AM
Proton NMR problems (3) Proton NMR problems (3) http://i.ytimg.com/vi/7bTv_-4CUEA/default.jpg Proton NMR problems (3) Organic chemistry: Proton NMR (nuclear magnetic resonance) spectroscopy problems This is a recording of a tutoring session, posted with the students' permission. These videos are offered on a "pay-what-you-like" basis. You can pay for the use of the videos at my website: www.freelance-teacher.com For a printable document containing the NMR table and problems discussed in this video series, go to my website. For a list of all the available video series, arranged in suggested viewing order,...	nmrlearner	NMR educational videos	0	08-18-2010 01:38 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off