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NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


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Old 03-14-2005, 09:45 AM
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Tensor 2 download

Tensor 2 manual

Tensor 2 theory


Description of the program from the Tensor website:

TENSOR2 allows the determination of the rotational diffusion tensor from three-dimensional structure coordinates and 15N relaxation data. Confidence in the various models available to describe the tensor is estimated using Monte-Carlo sampling methods in combination with appropriate kai^2 and F-tests, made possible by a highly efficient simulated annealing algorithm.

A graphical interface allows the visualisation of the orientation of tensorial components with respect to the three-dimensional coordinates of the molecule, and provides a graphical presentation of the statistical behaviour of the system.

Tensor now carries out an analysis of internal motion using the Lipari-Szabo or extended Lipari-Szabo type analysis. It's about time. This can either be performed using an isotropic rotor to describe rotational diffusion, or using the anisotropic tensor determined using a subset of spins, themselves assumed to have a negligible component to their internal motion. The internal mobility analysis is performed using the logic introduced by the NIH lab (Clore et al 1990),and reproduced by Professor Art Palmer's lab (Mandel et al 1995), sequentially fitting with more complicated models until the data are adequately reproduced. The confidence limits and uncertainty in the parameters are determined using a rapid monte-carlo based statistical analysis. As has been noted by numerous authors, the error function defined by the fitted internal mobility parameters {S2,ti} is highly non-linear when fitting R1,R2 and heteronuclear nOe. It is now possible to rapidly scan the monte-carlo simulations from the fit of each 15N site to check the definition of the optimised internal mobility parameters."
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