CASD-NMR | Deploying and unifying the NMR e-Infrastructure in System Biology

		BioNMR > NMR community > NMR bookmarks
CASD-NMR \| Deploying and unifying the NMR e-Infrastructure in System Biology

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-19-2010, 02:34 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

CASD-NMR | Deploying and unifying the NMR e-Infrastructure in System Biology

CASD-NMR | Deploying and unifying the NMR e-Infrastructure in System Biology

Critical Assessment of Automated Structure Determination of Proteins from NMR data - "CASD-NMR is a rolling community-wide experiment involving developers of software tools / protocols for the automated calculation of protein structures from NMR data. The goal of CASD-NMR is to help advance the relevant methodology in order to reach the level of quality and reliability required for direct structure deposition in the PDB. CASD-NMR will also produce extensive data sets that will be useful to develop better methods for NMR structure validation."

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR tweet] Frontiers of Nuclear Magnetic Resonance in Molecular Biology (UCLA Symposia on Molecular and Cellular Biology, ... http://amzn.to/hLhUP1 Frontiers of Nuclear Magnetic Resonance in Molecular Biology (UCLA Symposia on Molecular and Cellular Biology, ... http://amzn.to/hLhUP1 Published by Caritaxg55 (Carita Calvano) on 2011-04-19T22:01:24Z Source: Twitter	nmrlearner	Twitter NMR	0	04-19-2011 10:11 PM
[NMR900 blog] 1 GHz NMR system from Agilent 1 GHz NMR system from Agilent Agilent is well-prepared for upcoming 52nd ENC Conference, among several interesting NMR product announcements there is a 1 GHz NMR system ! Read the full press release from Agilent (external link). https://blogger.googleusercontent.com/tracker/8663203727601106205-8313799067402229537?l=nmr900.blogspot.com Read complete story on NMR900 blog	nmrlearner	News from NMR blogs	0	04-09-2011 12:17 AM
[NMR900 blog] 850 MHz NMR System at UBC 850 MHz NMR System at UBC University of British Columbia Orders Canada's First Compact 850 MHz NMR System from Bruker to Enable Research on Microbial Diseases Vancouver, British Columbia, December 15, 2010 (press release) http://www.bruker-biospin.com/index.php?id=4291 Bruker Corporation (NASDAQ: BRKR) announces a major order from the University of British Columbia for its ultra-high field AVANCE™ III 850 spectrometer. The 850 MHz Nuclear Magnetic Resonance (NMR) magnet and spectrometer will enable researchers at the University of British Columbia and nearby Simon Fraser University...	nmrlearner	News from NMR blogs	0	12-16-2010 12:37 AM
e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biol e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biology http://i.ytimg.com/vi/r8Rfv1TrQ4s/default.jpg e-NMR: Computational NMR Infrastructure in biomolecular life sciences and system biology In order to enable the life science community to make full use of the EGEE computing resources we have developed e-infrastructure named eNMR (EU 7th FP). It deploys and integrates biomolecular NMR applications into a platform, so that EU scientists could easily access it via a standard browser interface and to use it on every step of their research process. The...	nmrlearner	NMR educational videos	0	09-02-2010 03:58 PM
[BMNRC community] e-NMR NMR computational infrastructure e-NMR NMR computational infrastructure http://www.enmr.eu/ Manuals for the e-NMR software and web-portals Go to BMNRC community to find more info about this topic.	nmrlearner	News from other NMR forums	0	09-02-2010 04:59 AM
[Stan NMR blog] 'System/360 Scientific Subroutine Package' available online 'System/360 Scientific Subroutine Package' available online A free, online re-edition of the historic 1968 IBM document. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM
Home \| Deploying and unifying the NMR e-Infrastructure in System Biology Home \| Deploying and unifying the NMR e-Infrastructure in System Biology More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM
Crystallography & NMR System Crystallography & NMR System More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off