AIST:RIO-DB Spectral Database for Organic Compounds,SDBS

		BioNMR > NMR community > NMR bookmarks
AIST:RIO-DB Spectral Database for Organic Compounds,SDBS

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-19-2010, 02:34 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,775

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

AIST:RIO-DB Spectral Database for Organic Compounds,SDBS

AIST:RIO-DB Spectral Database for Organic Compounds,SDBS

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR tweet] http://www.pulist.net/spectrometric-identification-of-organic-compounds.html #nuclear #magnetic #resonance #nmr Spectrometric Identifica http://www.pulist.net/spectrometric-identification-of-organic-compounds.html #nuclear #magnetic #resonance #nmr Spectrometric Identifica Published by pulistbook (pulist books) on 2011-03-23T14:18:10Z Source: Twitter	nmrlearner	Twitter NMR	0	03-23-2011 02:51 PM
[NMR tweet] Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor... Maven Semantic: Nuclear Magnetic Resonance Database: The new database is now available to marketing, business development, competitor... Published by Cheryl_Gates (Cheryl Gates) on 2011-01-18T14:33:38Z Source: Twitter	nmrlearner	Twitter NMR	0	01-18-2011 03:01 PM
[NMR analysis blog] Conformational analysis of cyclic compounds using Mspin and RDCs Conformational analysis of cyclic compounds using Mspin and RDCs On the occasion of the release of a new version of Mspin (BTW, this is the very first multiplatform version of Mspin: it works now in Windows, Mac OS X and Linux), I would like to bring into your attention one of the many applications where this software plays an instrumental role: The application of Mspin to the study of seven-membered rings compounds by NMR. The NMR study of seven-membered ring compounds is a classical problem in conformational analysis. They are commonly studied by means of NOE-based experiments...	nmrlearner	News from NMR blogs	0	10-24-2010 08:03 AM
Evolution of organic matter during composting of different organic wastes assessed by Evolution of organic matter during composting of different organic wastes assessed by CPMAS (13)C NMR spectroscopy. Related Articles Evolution of organic matter during composting of different organic wastes assessed by CPMAS (13)C NMR spectroscopy. Waste Manag. 2010 Oct 19; Authors: Caricasole P, Provenzano MR, Hatcher PG, Senesi N In this paper, the evolution of organic matter (OM) during composting of different mixtures of various organic wastes was assessed by means of chemical analyses and CPMAS (13)C NMR spectroscopy measured during...	nmrlearner	Journal club	0	10-23-2010 05:48 PM
[BMNRC community] Advance course on Identification of organic and inorganic compounds by NMR Advance course on Identification of organic and inorganic compounds by NMR http://www.chem.queensu.ca/Facilities/NMR/nmr/chem806/index.htm Go to BMNRC community to find more info about this topic.	nmrlearner	News from other NMR forums	0	10-14-2010 04:59 AM
Characterization of caged compounds binding to proteins by NMR spectroscopy. Characterization of caged compounds binding to proteins by NMR spectroscopy. Characterization of caged compounds binding to proteins by NMR spectroscopy. Biochem Biophys Res Commun. 2010 Aug 27; Authors: Bandorowicz-Pikula J, Buchet R, Cañada FJ, Clémancey M, Groves P, Jiménez-Barbero J, Lancelin JM, Marcillat O, Pikula S, Sekrecka-Belniak A, Strzelecka-Kiliszek A Photolysable caged ligands are used to investigate protein function and activity. Here, we investigate the binding properties of caged nucleotides and their photo released...	nmrlearner	Journal club	0	09-02-2010 03:58 PM
AIST:RIO-DB Spectral Database for Organic Compounds,SDBS AIST:RIO-DB Spectral Database for Organic Compounds,SDBS More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM
Sdbs SDBS SDBS--Spectral Database of Organic Compounds. Great website for helping determine unknown organic spectra, including proton and carbon NMR, mass-spectrum, and infrared. More...	nmrlearner	NMR bookmarks	0	08-19-2010 02:34 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Trackbacks are Off Pingbacks are Off Refbacks are Off