BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 04-11-2013, 09:27 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,775
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default WEFT water suppression on Varian?

WEFT water suppression on Varian?

I am working with carbohydrates and in 1D NMR we have anomeric protons very close to the HOD peak, sometimes even right under there. In the lab where I used to work we had a bruker machine with an adapted WEFT pulse (described by Hard et al, 1995), which basically does a 180 degree pulse on the HOD, followed by a HS pulse of 50 usec, d1 times to have 0 magnetization on HOD, then a detection pulse.

Since the HOD relaxes much slower than the glycan H-C protons you get about 80% signal on nearby glycan protons and your HOD is usually nearly gone. Glycan protons farther away from the HOD are at full signal strength (which is not so in the normal WEFT pulse described in 1972)

Where I work now, we have Varian machines with pre-installed PRESAT and WET1D pulses, however, these pulses do not only suppress the HOD signal, but also remove any carbohydrate signal that is near, or under, the HOD signal. Does anyone know of a way to adjust settings in the WET1D, which uses a shaped pulse for the HOD suppression much like the WEFT, to avoid the glycan signal suppression? Or do I have to try and get our old bruker pulse from my previous employer and try to translate it into Varian language?



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Keeping PASE with WEFT: SHWEFT-PASE pulse sequences for (1) H NMR spectra of highly paramagnetic molecules.
Keeping PASE with WEFT: SHWEFT-PASE pulse sequences for (1) H NMR spectra of highly paramagnetic molecules. Related Articles Keeping PASE with WEFT: SHWEFT-PASE pulse sequences for (1) H NMR spectra of highly paramagnetic molecules. Magn Reson Chem. 2013 Feb 10; Authors: Helms G, Satterlee JD Abstract Metalloproteins are a category of biomolecules in which the metal site is usually the locus of activity or function. In many cases, the metal ions are paramagnetic or have accessible paramagnetic states, many of which can be studied using NMR...
nmrlearner Journal club 0 02-13-2013 12:47 PM
[U. of Ottawa NMR Facility Blog] "Absolute" Water Suppression
"Absolute" Water Suppression Collecting 1H NMR spectra of aqueous samples is complicated by the presence of the enormous, broad water signal which is often many orders of magnitude more intense than the signals from the solute of interest. The water signal can be suppressed by presaturation or multiple pulse techniques employing gradients (such as WATERGATE). These techniques are compared here and do a very good job, but neither is able to completely suppress the water signal in very dilute challenging samples. Recently, a technique introduced by Buuan Lam and Andre Simpson* which uses...
nmrlearner News from NMR blogs 0 05-11-2011 07:32 PM
[Question from NMRWiki Q&A forum] Which are better methods of water suppression at higher salt concentrations?
Which are better methods of water suppression at higher salt concentrations? Hello, could anyone recommend better technique for water suppression for the samples having higher salt concentration? At what salt concentration is the method effective? Dr. Talluri mentioned in his post that water suppression using soft pulses (such as one using excitation sculpting) is not as friendly for high salt samples - what is the mechanism?
nmrlearner News from other NMR forums 0 08-22-2010 02:30 AM
[NMRwiki tweet] nmrwiki: Unanswered question: For salty #NMR samples - which water suppression is bes
nmrwiki: Unanswered question: For salty #NMR samples - which water suppression is best? http://qa.nmrwiki.org/question/132/ nmrwiki: Unanswered question: For salty #NMR samples - which water suppression is best? http://qa.nmrwiki.org/question/132/ Source: NMRWiki tweets
nmrlearner Twitter NMR 0 08-22-2010 01:49 AM
[U. of Ottawa NMR Facility Blog] Background Suppression in Liquids
Background Suppression in Liquids High resolution NMR probes for liquids may contain parts near the coil consiting of the nuclei being observed. The parts give rise to background signals which can severely affect the NMR data. When observing11B, there is a background signal from boron containing parts near the coil and also the borosilicate glass in the NMR tube containing the sample. Cory and Ritchey* introduced a very simple, clever method to suppress background signals in 1988. Their method uses a composite pulse, consisting of a 90° and two 180° pulses with appropriate phase...
nmrlearner News from NMR blogs 0 08-21-2010 08:15 PM
[Stan NMR blog] Suppression of receiver recovery time in NMR
Suppression of receiver recovery time in NMR Extention of the classical Lowe-Tarr circuit More...
nmrlearner News from NMR blogs 0 08-21-2010 06:14 PM
Solvent signal suppression in NMR
Solvent signal suppression in NMR Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 25 January 2010</br> Gang, Zheng , William S., Price</br> More...
nmrlearner Journal club 0 08-16-2010 03:50 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 02:57 PM.


Map