BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-02-2011, 12:25 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default varian-topspin conversion processing artifacts?

varian-topspin conversion processing artifacts?

I have been using topspin to process data recorded on a varian magnet, when processing a 13C-HSQC I noticed one of my peaks (a di -methyl lysine peak) was unusually split into 3, I originally thought this looked quite interesting but when I look at the same peak in vnmrj the peak is a single peak. the splitting is restricted to that single peak and ive recorded the same protein at multiple pH and still get the splitting on that peak. Opinions would be appreciated, is this just a processing artifact from the data conversion or is there something in the processing in vnmrj thats broadening the signal into one?

thanks

Tom



Check if somebody has answered this question on NMRWiki QA forum
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[Question from NMRWiki Q&A forum] halt command in topspin 3
halt command in topspin 3 Hello all nmr wikier last week we have upgraded software topspin2.1 to topspin3 on bruker av400 machine.when we use halt command within multizg the next experiment didn't run while spooler is on I mean the current experiment halted with fid save but did didn't run next experiments in the quee and finshes with multizg finish while on periviously version it run automatically the next experiment in the quee on halting.Does any body knows where is the problem.(spooler is on enable in setres) Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 12-02-2011 01:51 AM
[KPWU blog] Bruker?s Topspin running on Mac
Bruker?s Topspin running on Mac Balance the report as I just made a post for Agilent’s VnmrJ. I found from a web blog article that introduces the news–Bruker’s Topspin 3.1 for Mac. Bruker’s*brief introduction of Topspin for Mac machine includes features: Mac OS X platform for TopSpin processing Inspire a new generation of NMR users, experts and students alike Entirely http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=584&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.
nmrlearner News from NMR blogs 0 10-19-2011 09:38 PM
Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra
Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra Abstract Here we describe phasing anomalies observed in gradient sensitivity enhanced 15N-1H HSQC spectra, and analyze their origin. It is shown that, as a result of 15N off-resonance effects, dispersive contributions to the 1H signal become detectable, and lead to 15N-offset dependent phase errors. Strategies that effectively suppress these artifacts are presented. Content Type Journal Article Category Article Pages 199-207
nmrlearner Journal club 0 09-30-2011 08:01 PM
[Question from NMRWiki Q&A forum] NOESY+WET 2D artifacts
NOESY+WET 2D artifacts When i run 2d noesy with wet suppression (Hypercomplex with phase=1,2, nt=32, so phasecycle errors should be excluded)), i always found strong artifact ("mirrored diagonal") in the center of thespectrum. I know it is known artifact in Hypercomplex method, but never observed it without wet. How can I avoid this artifact? Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 09-07-2011 08:21 PM
[Question from NMRWiki Q&A forum] modulo or integer division in topspin
modulo or integer division in topspin Hi! is there a possibility to perform an integer division or a modulo calculation in topspin 2.1? Thank you!
nmrlearner News from other NMR forums 0 09-06-2011 08:17 PM
[Question from NMRWiki Q&A forum] processing varian data in topspin?
processing varian data in topspin? Hi I have recently moved to a lab which has a varian magnet, in the past I have only used brukers. The people here use NMRpipe for processing which I am not a fan of. Is there a simple way to process Varian data in topspin? I know this is relatively simple for 1D but I am told it cant be done easily for 2D or 3D data? is this the case? Any answer would be appreciated
nmrlearner News from other NMR forums 0 12-28-2010 05:27 AM
[Question from NMRWiki Q&A forum] what is different between nmrpipe and topspin softwares
what is different between nmrpipe and topspin softwares hi, i am new user to nmrpipe i want to know how this nmrpipe differs with topspin 2.1 software because when i use same phase values in two softwares ,i observed two different spectra.1.can i use abs2,abs1 commands(for watersuppression in topspin) in nmrpipe also ?2.After determining noise level from nmrpipe what value we have to use in first and factors.3.how to fit nmrpipe full spectra to squre layout like topspin does.4.cant we phase spectra in test.ft2 after getting two dimensional spectrum. Check if somebody has answered...
nmrlearner News from other NMR forums 0 11-01-2010 11:04 AM
[NMR paper] Overcoming solvent saturation-transfer artifacts in protein NMR at neutral pH. Applic
Overcoming solvent saturation-transfer artifacts in protein NMR at neutral pH. Application of pulsed field gradients in measurements of 1H-15N Overhauser effects. Related Articles Overcoming solvent saturation-transfer artifacts in protein NMR at neutral pH. Application of pulsed field gradients in measurements of 1H-15N Overhauser effects. J Magn Reson B. 1994 Sep;105(1):45-51 Authors: Li YC, Montelione GT Artifacts due to solvent saturation-transfer effects result in incorrect measurements of 1H-15N heteronuclear NOE (HNOE). These artifacts...
nmrlearner Journal club 0 08-22-2010 03:29 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:40 PM.


Map