NMR Sparky Yahoo group Sparky on Ubuntu 11.04 problem

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[NMR Sparky Yahoo group] Sparky on Ubuntu 11.04 problem

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NMR processing:

MDD

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Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

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NOEs, other restraints:

Chemical shifts:

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Pseudocontact shifts:

Protein geomtery:

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FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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05-16-2011, 08:23 PM

nmrlearner

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Sparky on Ubuntu 11.04 problem

Sparky on Ubuntu 11.04 problem

Hi All, I am new to Sparky, I follow the installation instruction by typing "tar zxf /tmp/sparky-linux2.6.tar.gz" in a Ubuntu 11.04 machine to the suggested

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[NMR Sparky Yahoo group] Re: Cannot install sparky on ubuntu... Re: Cannot install sparky on ubuntu... Hi Bill, Did you use these linux Sparky install instructions http://www.cgl.ucsf.edu/home/sparky/manual/install.html#InstallUnix where it says you can run More...	nmrlearner	News from other NMR forums	0	10-24-2011 11:06 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem Dear All, I found out later that I have to install the tcsh in order to have Sparky running properly. Thanks for the replys! Best More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:40 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem add the following line to your .bashrc export PATH=$PATH:/usr/local/sparky/bin good luck On Sat, May 14, 2011 at 12:51 PM, unclecheong2000 < ... -- Peng Ji More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem You probably just need to verify that /usr/local/sparky/bin/ is in your executable path. Josh More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Sparky on Ubuntu 11.04 problem Sparky on Ubuntu 11.04 problem Hi All, I am new to Sparky, I follow the installation instruction by typing "tar zxf /tmp/sparky-linux2.6.tar.gz" in a Ubuntu 11.04 machine to the suggested More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem add the following line to your .bashrc export PATH=$PATH:/usr/local/sparky/bin good luck On Sat, May 14, 2011 at 12:51 PM, unclecheong2000 < ... -- Peng Ji More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:23 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem You probably just need to verify that /usr/local/sparky/bin/ is in your executable path. Josh More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:23 PM

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