NMR Sparky Yahoo group Sparky on Mac OS 10.8 / XQuartz

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Sparky on Mac OS 10.8 / XQuartz

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-15-2013, 03:12 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Sparky on Mac OS 10.8 / XQuartz

Sparky on Mac OS 10.8 / XQuartz

Hi Aikaterini, I installed XQuartz version 2.7.4 on my Mac OS 10.8 (Mountain Lion) machine http://xquartz.macosforge.org/landing/ and Sparky 3.115 ran without

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: Sparky on Mac OS 10.8 / XQuartz Re: Sparky on Mac OS 10.8 / XQuartz Hi Ravi, I start Sparky on the Mac by double-clicking the icon. I can start it from a terminal like so /Users/goddard/Desktop/Sparky\ More...	nmrlearner	News from other NMR forums	0	05-15-2013 03:12 PM
[NMR Sparky Yahoo group] Re: Sparky on Mac OS 10.8 / XQuartz Re: Sparky on Mac OS 10.8 / XQuartz Dear Tom How did you solved the space problem of Sparky 3.115 in defining the path. I have installed sparky but when I type the command sparky in terminal it More...	nmrlearner	News from other NMR forums	0	05-15-2013 03:12 PM
[NMR Sparky Yahoo group] Re: Sparky on Mac OS 10.8 / XQuartz Re: Sparky on Mac OS 10.8 / XQuartz Hi Ravi, I start Sparky on the Mac by double-clicking the icon. I can start it from a terminal like so /Users/goddard/Desktop/Sparky\ More...	nmrlearner	News from other NMR forums	0	04-04-2013 08:50 PM
[NMR Sparky Yahoo group] Re: Sparky on Mac OS 10.8 / XQuartz Re: Sparky on Mac OS 10.8 / XQuartz Dear Tom How did you solved the space problem of Sparky 3.115 in defining the path. I have installed sparky but when I type the command sparky in terminal it More...	nmrlearner	News from other NMR forums	0	04-04-2013 08:50 PM
[NMR Sparky Yahoo group] Sparky on Mac OS 10.8 / XQuartz Sparky on Mac OS 10.8 / XQuartz Hi Aikaterini, I installed XQuartz version 2.7.4 on my Mac OS 10.8 (Mountain Lion) machine http://xquartz.macosforge.org/landing/ and Sparky 3.115 ran without More...	nmrlearner	News from other NMR forums	0	03-09-2013 11:56 PM
[NMRpipe Yahoo group] Re: nmrPipe, XQuartz and Apple's Software Update Re: nmrPipe, XQuartz and Apple's Software Update Don't forget that after you do Apple Software Update and re-install XQuartz 2.5.3, you have to log out and log in. Simply closing and re-starting X11 isn't More...	NMRpipe Yahoo group news	News from other NMR forums	0	11-16-2010 05:43 AM
[NMRpipe Yahoo group] Re: nmrPipe, XQuartz and Apple's Software Update Re: nmrPipe, XQuartz and Apple's Software Update Awesome! Thanks for the heads up. Ryan On 2010-11-12, at 12:05 PM, kristie_1213 wrote: Hi all, I thought I would pass along recent experience with nmrPipe More...	NMRpipe Yahoo group news	News from other NMR forums	0	11-16-2010 05:43 AM
[NMRpipe Yahoo group] nmrPipe, XQuartz and Apple's Software Update nmrPipe, XQuartz and Apple's Software Update Hi all, I thought I would pass along recent experience with nmrPipe (latest, Version 5.5 Rev 2010.302.14.25), XQuartz 2.5.3 and Mac OS X 10.6.5, and a More...	NMRpipe Yahoo group news	News from other NMR forums	0	11-13-2010 05:00 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off