CNS Yahoo group SIFTS mapping files between PDB and UniProt, Pfam, EC, CATH, SCOP, G

		BioNMR > NMR community > News from other NMR forums
[CNS Yahoo group] SIFTS mapping files between PDB and UniProt, Pfam, EC, CATH, SCOP, G

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-17-2010, 04:50 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

SIFTS mapping files between PDB and UniProt, Pfam, EC, CATH, SCOP, G

SIFTS mapping files between PDB and UniProt, Pfam, EC, CATH, SCOP, G

The Protein Data Bank in Europe (PDBe; http://pdbe.org/) is pleased to announce the "Structure Integration with Function, Taxonomy and Sequence" (SIFTS)

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[CNS Yahoo group] problem running test files in CNS 1.3 problem running test files in CNS 1.3 Hello, I installed CNS 1.3 on linux (intel i686) and used the testfiles. Up to this everything worked fine but when I tried to compare the output files with More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[CNS Yahoo group] problem running test files in CNS 1.3 problem running test files in CNS 1.3 Hello, I installed CNS 1.3 on linux (intel i686) and used the testfiles. Up to this everything worked fine but when I tried to compare the output files with More...	nmrlearner	News from other NMR forums	0	10-10-2011 06:30 PM
[CNS Yahoo group] PDBe introduces UniPDB - a UniProt-PDB sequence-coverage widget PDBe introduces UniPDB - a UniProt-PDB sequence-coverage widget Hi all, As part of its recent summer update, the Protein Data Bank in Europe (PDBe; http://pdbe.org) introduced UniPDB (http://pdbe.org/unipdb), a widget for More...	nmrlearner	News from other NMR forums	0	07-21-2011 10:31 PM
NC diagnostics firm LipoScience files for $86M IPO - MedCity News <img alt="" height="1" width="1" /> NC diagnostics firm LipoScience files for $86M IPO MedCity News LipoScience's patented technology uses nuclear magnetic resonance to test for lipoproteins, which the company says are a better measure of cardiovascular risk than cholesterol levels. The testing technology was developed at North Carolina State ... and more » NC diagnostics firm LipoScience files for $86M IPO - MedCity News More...	nmrlearner	Online News	0	06-24-2011 04:01 PM
[Question from NMRWiki Q&A forum] Software to create shaped pulse files from mathematical equation? Software to create shaped pulse files from mathematical equation? I would like to create working shaped pulse files in one step starting from mathematical expressions - one for amplitude, another for phase vs. time. Does anyone know software that can do it? Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	04-12-2011 01:10 PM
[Question from NMRWiki Q&A forum] converting nmrpipe processed data (.ft3 files) to felix matrix converting nmrpipe processed data (.ft3 files) to felix matrix I am trying to convert the .ft3 files into a felix matrix using the pipe2mat conversion filter in felix but it doesn't seem to work properly - it does generate a matrix but the size of the matrix is too small and Felix freezes if I try to open it. Does anyone have a script to do so? or maybe you got the felix filter to work? Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	12-07-2010 09:54 AM
[CNS Yahoo group] PDBePISA assembly, summary and XML data files available from the Pro PDBePISA assembly, summary and XML data files available from the Pro The Protein Data Bank in Europe (PDBe; http://pdbe.org/) is pleased to announce the availability of PISA assembly files, summaries and associated XML More...	nmrlearner	News from other NMR forums	0	08-21-2010 03:26 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off