BMNRC community SANE ? Structure Assisted NOE Evaluation

		BioNMR > NMR community > News from other NMR forums
[BMNRC community] SANE ? Structure Assisted NOE Evaluation

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-15-2011, 02:31 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

SANE ? Structure Assisted NOE Evaluation

SANE ? Structure Assisted NOE Evaluation

SANE is a perl program which generates restraints from crosspeaks in NOESY
spectra. It works with crosspeak lists from… Read the rest

Go to BMNRC community to find more info about this topic.

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
New Book on Computer-Assisted Structure Elucidation Source: Ryan's blog New Book on Computer-Assisted Structure Elucidation It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me... Read more...	nmrlearner	Books	0	02-15-2012 04:01 PM
New Book on Computer-Assisted Structure Elucidation Source: Ryan's blog New Book on Computer-Assisted Structure Elucidation It's been a very long time since my last post. I apologize for that, but I can assure that my posting absence has not been due to lack of quality things to talk about. Hopefully this post will help me... Read more...	nmrlearner	Books	0	02-15-2012 03:51 PM
Dynamics and interactions of glycoconjugates probed by stable-isotope-assisted NMR spectroscopy. Dynamics and interactions of glycoconjugates probed by stable-isotope-assisted NMR spectroscopy. Dynamics and interactions of glycoconjugates probed by stable-isotope-assisted NMR spectroscopy. Methods Enzymol. 2010;478:305-22 Authors: Yamaguchi Y, Kato K Unique advantages offered by nuclear magnetic resonance (NMR) spectroscopy provide high-resolution information not only on structures but also on dynamics and interactions of glycoconjugates in solution. These benefits are further enhanced by applying stable-isotope-labeling techniques, which we...	nmrlearner	Journal club	0	12-31-2010 07:03 PM
[NMR paper] Mass spectrometry assisted assignment of NMR resonances in 15N labeled proteins. Mass spectrometry assisted assignment of NMR resonances in 15N labeled proteins. Related Articles Mass spectrometry assisted assignment of NMR resonances in 15N labeled proteins. J Am Chem Soc. 2004 Nov 10;126(44):14377-9 Authors: Feng L, Orlando R, Prestegard JH Application of nuclear magnetic resonance (NMR) methods for the structural characterization to larger and more complex protein systems can be facilitated through the development of new methods for resonance assignment. Here, a novel approach that relies on integration of NMR and mass...	nmrlearner	Journal club	0	11-24-2010 10:03 PM
[NMR paper] Dipolar assisted rotational resonance NMR of tryptophan and tyrosine in rhodopsin. Dipolar assisted rotational resonance NMR of tryptophan and tyrosine in rhodopsin. Related Articles Dipolar assisted rotational resonance NMR of tryptophan and tyrosine in rhodopsin. J Biomol NMR. 2004 May;29(1):11-20 Authors: Crocker E, Patel AB, Eilers M, Jayaraman S, Getmanova E, Reeves PJ, Ziliox M, Khorana HG, Sheves M, Smith SO Two dimensional (2D) solid-state (13)C.(13)C dipolar recoupling experiments are performed on a series of model compounds and on the visual pigment rhodopsin to establish the most effective method for long range...	nmrlearner	Journal club	0	11-24-2010 09:51 PM
Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a m Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a model system. Related Articles Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a model system. Prog Nucl Magn Reson Spectrosc. 2010 May;56(4):346-59 Authors: Kato K, Yamaguchi Y, Arata Y	nmrlearner	Journal club	0	10-19-2010 04:51 PM
[NMR paper] Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and a Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B. Related Articles Computer-assisted assignment of 2D 1H NMR spectra of proteins: basic algorithms and application to phoratoxin B. J Biomol NMR. 1991 May;1(1):23-47 Authors: Kleywegt GJ, Boelens R, Cox M, Llinás M, Kaptein R A suite of computer programs (CLAIRE) is described which can be of assistance in the process of assigning 2D 1H NMR spectra of proteins. The programs embody a software implementation of the sequential assignment...	nmrlearner	Journal club	0	08-21-2010 11:16 PM
Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a m Stable-isotope-assisted NMR approaches to glycoproteins using immunoglobulin G as a model system Publication year: 2010 Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 19 March 2010</br> Koichi, Kato , Yoshiki, Yamaguchi , Yoji, Arata</br> More...	nmrlearner	Journal club	0	08-16-2010 03:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off