NMR Sparky Yahoo group Regarding processing problem of 2D TOCSY ucsf in sparky

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[NMR Sparky Yahoo group] Regarding processing problem of 2D TOCSY ucsf in sparky

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NMR processing:

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Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

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Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

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HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

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Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

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MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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05-15-2013, 03:12 PM

nmrlearner

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Regarding processing problem of 2D TOCSY ucsf in sparky

Regarding processing problem of 2D TOCSY ucsf in sparky

Dear sir/Madam, I am a sparky user and using this software for 2D NMR assignment....I used this software many time...I am facing a problem in ucsf file of 2D

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[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not More...	nmrlearner	News from other NMR forums	0	05-15-2013 03:12 PM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hello Pancham, You can apply a chemical shift correction to your TOCSY spectrum using your ROESY spectrum as a reference: - First, do the peak picking of a few More...	nmrlearner	News from other NMR forums	0	05-15-2013 03:12 PM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, Additionally, please post the output of ucsfdata program, which you can find in the bin folder of Sparky installation. Something like, ucsfdata TOCSY.ucsf More...	nmrlearner	News from other NMR forums	0	05-15-2013 03:12 PM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not More...	nmrlearner	News from other NMR forums	0	05-14-2013 12:19 AM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hello Pancham, You can apply a chemical shift correction to your TOCSY spectrum using your ROESY spectrum as a reference: - First, do the peak picking of a few More...	nmrlearner	News from other NMR forums	0	05-13-2013 11:36 AM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, Additionally, please post the output of ucsfdata program, which you can find in the bin folder of Sparky installation. Something like, ucsfdata TOCSY.ucsf More...	nmrlearner	News from other NMR forums	0	05-10-2013 07:03 PM
[NMR Sparky Yahoo group] R: [nmr_sparky] Regarding processing problem of 2D TOCSY ucsf in spa R: Regarding processing problem of 2D TOCSY ucsf in spa Hi Pancham, did you check the acquisition parameters you used to record the spectrum? Best, Marco Dr.Marco Sette, Ph.D. Department of Chemical Sciences and More...	nmrlearner	News from other NMR forums	0	05-10-2013 06:58 AM
[NMR Sparky Yahoo group] Regarding processing problem of 2D TOCSY ucsf in sparky Regarding processing problem of 2D TOCSY ucsf in sparky Dear sir/Madam, I am a sparky user and using this software for 2D NMR assignment....I used this software many time...I am facing a problem in ucsf file of 2D More...	nmrlearner	News from other NMR forums	0	05-09-2013 05:37 PM

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