NMR Sparky Yahoo group regarding input for autoassign

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] regarding input for autoassign

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-16-2011, 08:22 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

regarding input for autoassign

regarding input for autoassign

Dear All, I want to ask if it's possible to input any spectra other than the normal triple resonance spectras being used for backbone assignment in autoassign.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[CNS Yahoo group] Re: ir_phase input Re: ir_phase input Hi All, I am facing the same problem reported by Rob in 2002. Is there any solution for this. Many thanks. Regards, -Kiran More...	nmrlearner	News from other NMR forums	0	02-06-2012 03:54 PM
[CNS Yahoo group] Re: ir_phase input Re: ir_phase input Hi All, I am facing the same problem reported by Rob in 2002. Is there any solution for this. Many thanks. Regards, -Kiran More...	nmrlearner	News from other NMR forums	0	02-03-2012 10:14 PM
[NMR Sparky Yahoo group] Re: regarding input for autoassign Re: regarding input for autoassign ... probably better to ask the autoassign folks... -E More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:22 AM
[NMR Sparky Yahoo group] Re: regarding input for autoassign Re: regarding input for autoassign ... probably better to ask the autoassign folks... -E More...	nmrlearner	News from other NMR forums	0	02-22-2011 11:00 AM
[NMR Sparky Yahoo group] regarding input for autoassign regarding input for autoassign Dear All, I want to ask if it's possible to input any spectra other than the normal triple resonance spectras being used for backbone assignment in autoassign. More...	nmrlearner	News from other NMR forums	0	02-22-2011 11:00 AM
[NMR Sparky Yahoo group] problem using autoassign in sparky problem using autoassign in sparky Dear all, I am not being able to understand how to use the 2D projection of 3D spectra for eg HNCA,HNCOCA etc for correcting my 3D spectra in sparky while More...	nmrlearner	News from other NMR forums	0	02-17-2011 09:44 PM
[NMR Sparky Yahoo group] problem using kr command in AutoAssign problem using kr command in AutoAssign Dear All, I am trying to use restricted peak picking command (kr) of Auto Assign. What I am doing is that - first I am picking peaks in 1H-15N HSQC spectra and More...	nmrlearner	News from other NMR forums	0	02-09-2011 08:23 PM
[Question from NMRWiki Q&A forum] Should manipulate PDB file for SPARTA as an input/pred.tab as an input for nmrPipe? Should manipulate PDB file for SPARTA as an input/pred.tab as an input for nmrPipe? HELLO,I have a PDB file of two chains A and B, but as it mentioned in the manual of SPARTA, it read only one chain and the second chain will be ignored. I tried it and it did so. The PDB file I have was the output from Modeling of chain A (that had a mutation). I had refined the modeled structure after docking it into chain B (native). After refinement I have a PDB file of two chains. Now, I have two solutions in mind to get chemical shift prediction plotted in a spectra but I do not know if any of these...	nmrlearner	News from other NMR forums	0	11-19-2010 06:28 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off