NMRpipe Yahoo group Re: virtual fun with NMRPipe [1 Attachment] - BioNMR

BioNMR

NMR aggregator & online community since 2003

BioNMR

Learn or help to learn NMR - get free NMR books!

Ask NMR questions!

Earn NMR points

Redeem NMR points

Vote for NMR papers

Ask to aggregate a site

Our Linkedin group

		BioNMR > NMR community > News from other NMR forums
[NMRpipe Yahoo group] Re: virtual fun with NMRPipe [1 Attachment]

Pulse sequences

Software forums

Webservers

NMR processing:

NMR assignment:

Backbone:

Side-chains:

UNIO ATNOS-Ascan

NOEs:

UNIO ATNOS-Candid

Structure from NMR restraints:

Ab initio:

UNIO ATNOS-Candid

Fragment-based:

BMRB CS-Rosetta

Rosetta-NMR (Robetta)

Template-based:

Refinement:

Structure from chemical shifts:

Fragment-based:

WeNMR CS-Rosetta

BMRB CS-Rosetta

Homology-based:

Torsion angles from chemical shifts:

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

MICS caps, β-turns

Flexibility from chemical shifts:

Interactions from chemical shifts:

Chemical shifts re-referencing:

UNIO Shiftinspector

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

Resolution-by-Proxy

SAVES2 or SAVES4

Ramachandran Plot

Quality Control Check

NMR spectrum prediction:

Flexibility from structure:

Molecular dynamics:

Chemical shifts prediction:

From structure:

CH3shift- Methyl

ArShift- Aromatic

CheShift-2- Cα

From sequence:

Disordered proteins:

Format conversion & validation:

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

Protein solubility:

Isotope labeling:

Solid-state NMR:

Reply

Search this Thread

Rate Thread

#1

Old

11-30-2010, 08:11 AM

NMRpipe Yahoo group news NMRpipe Yahoo group news is offline

NMRpipe Yahoo group news is offline

Senior Member

Join Date: Aug 2010

Posts: 443

NMR Credits: 0

NMR Points: 0

Downloads: 0

Uploads: 0

Default

Re: virtual fun with NMRPipe [1 Attachment]

Re: virtual fun with NMRPipe [1 Attachment]

One more thing ... if you can't easily see the yahoogroups attachment of the illustration, you can also find it here:

More...

Reply With Quote

Did you find this post helpful?

|

Reply

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
From NMR Relaxation to Fractional Brownian Dynamics in Proteins : Results from a Virtual Experiment. From NMR Relaxation to Fractional Brownian Dynamics in Proteins : Results from a Virtual Experiment. From NMR Relaxation to Fractional Brownian Dynamics in Proteins : Results from a Virtual Experiment. J Phys Chem B. 2011 Aug 15; Authors: Calligari PA, Calandrini V, Kneller GR, Abergel D In a recent simulation study it has been shown that the time correlation functions probed by nuclear magnetic resonance (NMR) relaxation spectroscopy of proteins are well described by a fractional Brownian dynamics model, which accounts for the wide spectrum of...	nmrlearner	Journal club	0	08-17-2011 01:33 PM
[U. of Ottawa NMR Facility Blog] Virtual Coupling Virtual Coupling When the chemical shift difference between two J coupled nuclei is of the same order as the coupling constant, second order spectra are obtained. See this and this. One, often unrecognized, second order effect is virtual coupling which is often misinterpreted as first order weak coupling. In a three-spin system, virtual coupling occurs when the observed nucleus appears to be coupled to both of the other two nuclei even though it is only coupled to one of them. This arises in AA'X and ABX spin systems when X (the observed nucleus) is coupled to only one of the other two...	nmrlearner	News from NMR blogs	0	08-12-2011 02:30 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment] Re: 3D cube representation of NMRPipe data Looks pretty awesome! Thanks for the script! Is there a possibility to save the image somehow? justin -- Justin Lecher Institute of Complex Systems ICS-6 More...	NMRpipe Yahoo group news	News from other NMR forums	0	03-21-2011 07:27 PM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment] Re: 3D cube representation of NMRPipe data Thanks a lot! I will try the script and let you know if I have problems! Best regards Stefano On Mar 20, 2011, at 5:02 PM, Frank Delaglio wrote: More...	NMRpipe Yahoo group news	News from other NMR forums	0	03-21-2011 07:16 AM
[NMRpipe Yahoo group] Re: 3D cube representation of NMRPipe data [1 Attachment] Re: 3D cube representation of NMRPipe data Try downloading and installing the latest version of NMRPipe, which includes an updated version of nmrCube.tcl and other items that this script requires. As More...	NMRpipe Yahoo group news	News from other NMR forums	0	03-20-2011 07:14 PM
[NMRpipe Yahoo group] virtual fun with NMRPipe virtual fun with NMRPipe Greetings again, Fellow Pipers ... Enjoy the attached pic, which features an illustration made with output created by NMRPipe and then rendered in the virtual More...	NMRpipe Yahoo group news	News from other NMR forums	0	11-30-2010 08:11 AM
[NMR paper] The CrIIL reduction of [2Fe-2S] ferredoxins and site of attachment of CrIII using 1H The CrIIL reduction of ferredoxins and site of attachment of CrIII using 1H NMR and site-directed mutagenesis. Related Articles The CrIIL reduction of ferredoxins and site of attachment of CrIII using 1H NMR and site-directed mutagenesis. Inorg Chem. 2000 Apr 17;39(8):1755-64 Authors: Im SC, Worrall JA, Liu G, Aliverti A, Zanetti G, Luchinat C, Bertini I, Sykes AG The recently reported NMR solution structure of FeIIIFeIII parsley FdI has made possible 2D NOESY NMR studies to determine the point of attachment of CrIIIL in FeIIIFeIII...CrIIIL....	nmrlearner	Journal club	0	11-18-2010 09:15 PM
Not enough NMR time? Try Virtual NMR Spectrometer Want to test your new pulse sequence before running a NMR experiment? Try Virtual NMR spectrometer from Dr. Fushman lab. See program description from Dr. Fushman website below. *************************************************************** The Virtual NMR Spectrometer; a Computer Program for Efficient Simulation of NMR Experiments Involving Pulsed Field Gradients Version 3.5 features and future developments: Translator that allows the user to input pulse sequences using the programming language of an actual experiment and/or to execute the same pulse programs used on actual...	nmrlearner	NMR software	0	05-07-2005 10:08 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off