If you want to extract a subset of information in an NMRPipe format table, you can use the various scripting tools intended for that purpose. In particular,
[NMRpipe Yahoo group] Structure evaluation with dynamo
Structure evaluation with dynamo
Hi, I'm currently using Dynamo to evaluate molecular structure according to noe restraints. I've modified some of the scripts provided (pdb2dyn.tcl,
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12-02-2012 09:42 PM
[NMRpipe Yahoo group] Structures Refine by DYNAMO
Structures Refine by DYNAMO
Hello! Anyone*could help me with*some information*about*this*step in*DYNAMO? Any information will be helpful! 1. Additional structure calculations may be
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02-06-2012 03:54 PM
[NMRpipe Yahoo group] Structures Refine by DYNAMO
Structures Refine by DYNAMO
Hello! Anyone*could help me with*some information*about*this*step in*DYNAMO? Any information will be helpful! 1. Additional structure calculations may be
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01-31-2012 08:29 AM
[BMNRC community] SANE ? Structure Assisted NOE Evaluation
SANE ? Structure Assisted NOE Evaluation
SANE is a perl program which generates restraints from crosspeaks in NOESY
spectra. It works with crosspeak lists from… Read the rest
Go to BMNRC community to find more info about this topic.
nmrlearner
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06-15-2011 02:31 PM
NMR evaluation of interactions between substituted-indole and PDZ1 domain of PSD-95.
NMR evaluation of interactions between substituted-indole and PDZ1 domain of PSD-95.
NMR evaluation of interactions between substituted-indole and PDZ1 domain of PSD-95.
Bioorg Med Chem Lett. 2011 Apr 9;
Authors: Vogrig A, Boucherle B, Deokar H, Thomas I, Ripoche I, Lian LY, Ducki S
We synthesized small organic molecules designed as PDZ ligands. These indole-based compounds were evaluated for their interaction with the PDZ1 domain of the post-synaptic density 95 (PSD-95) protein. Three molecules were found to interact with the targeted PDZ protein...
nmrlearner
Journal club
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05-03-2011 03:20 PM
Crystallographic and NMR evaluation of the impact of peptide binding to the second PD
Crystallographic and NMR evaluation of the impact of peptide binding to the second PDZ domain of PTP1E.
Crystallographic and NMR evaluation of the impact of peptide binding to the second PDZ domain of PTP1E.
Biochemistry. 2010 Sep 14;
Authors: Zhang J, Sapienza PJ, Ke H, Chang A, Hengel SR, Wang H, Phillips GN, Lee AL
PDZ (PSD95/Discs large/ZO-1) domains are ubiquitous protein interaction motifs found in scaffolding proteins involved in signal transduction. Despite the fact that many PDZs show a limited tendency to undergo structural change, the...
nmrlearner
Journal club
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09-16-2010 02:59 PM
[NMR paper] Evaluation of Solvent Accessibility to the [Fe(4)S(4)] Binding Pocket in Native and T
Evaluation of Solvent Accessibility to the Binding Pocket in Native and Tyr19 Mutant High Potential Iron Proteins by (1)H-(15)N HMQC and (19)F NMR Experiments.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Evaluation of Solvent Accessibility to the Binding Pocket in Native and Tyr19 Mutant High Potential Iron Proteins by (1)H-(15)N HMQC and (19)F NMR Experiments.
Inorg Chem. 1996 Feb 28;35(5):1121-1125
Authors: Li D, Agarwal A, Cowan JA
The solvent accessibility of Chromatium...
Re: Structure evaluation with dynamo
Linear Mode
