NMR Sparky Yahoo group Re: Sparky on Ubuntu 11.04 problem

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-16-2011, 08:23 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,733

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Re: Sparky on Ubuntu 11.04 problem

Re: Sparky on Ubuntu 11.04 problem

add the following line to your .bashrc export PATH=$PATH:/usr/local/sparky/bin good luck On Sat, May 14, 2011 at 12:51 PM, unclecheong2000 < ... -- Peng Ji

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Cannot install sparky on ubuntu... Cannot install sparky on ubuntu... Hello, guys, I am a total newbie about linux and sparky, well, don't laugh. I am still learning. I am using ubuntu, and i followed the direction and installed More...	nmrlearner	News from other NMR forums	0	11-09-2011 06:44 AM
[NMR Sparky Yahoo group] Re: Cannot install sparky on ubuntu... Re: Cannot install sparky on ubuntu... Hi Bill, Did you use these linux Sparky install instructions http://www.cgl.ucsf.edu/home/sparky/manual/install.html#InstallUnix where it says you can run More...	nmrlearner	News from other NMR forums	0	10-24-2011 11:06 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem Dear All, I found out later that I have to install the tcsh in order to have Sparky running properly. Thanks for the replys! Best More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:40 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem add the following line to your .bashrc export PATH=$PATH:/usr/local/sparky/bin good luck On Sat, May 14, 2011 at 12:51 PM, unclecheong2000 < ... -- Peng Ji More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem You probably just need to verify that /usr/local/sparky/bin/ is in your executable path. Josh More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Sparky on Ubuntu 11.04 problem Sparky on Ubuntu 11.04 problem Hi All, I am new to Sparky, I follow the installation instruction by typing "tar zxf /tmp/sparky-linux2.6.tar.gz" in a Ubuntu 11.04 machine to the suggested More...	nmrlearner	News from other NMR forums	0	05-17-2011 08:30 AM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem Re: Sparky on Ubuntu 11.04 problem You probably just need to verify that /usr/local/sparky/bin/ is in your executable path. Josh More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:23 PM
[NMR Sparky Yahoo group] Sparky on Ubuntu 11.04 problem Sparky on Ubuntu 11.04 problem Hi All, I am new to Sparky, I follow the installation instruction by typing "tar zxf /tmp/sparky-linux2.6.tar.gz" in a Ubuntu 11.04 machine to the suggested More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:23 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off