NMR Sparky Yahoo group Re: Sparky: command not found

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Re: Sparky: command not found

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-09-2012, 07:38 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Re: Sparky: command not found

Re: Sparky: command not found

Hi Markus, Linux Sparky is 32-bit. Perhaps your virtual Ubuntu only has 64-bit libraries (libc, libm, X11, ... needed by Sparky). If this is the problem you

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[KPWU blog] [CSRosetta] one bug found for 3.1 one bug found for 3.1 When I use CSRosetta 3.1 on my iMac, I always meet an error that the runCSrescore3.com can’t work properly. The best_model is not selected, therefore the script doesn’t generate a 3-column name.rms.rescore.txt at the end. I might find where the bug is although it’s quite confused to me. 1. The extract_pdb3.com used in runCSrescore3.com contains http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=391&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	06-08-2011 01:20 AM
[Question from NMRWiki Q&A forum] Chemical exchange of Tyr residues - what information can be found about dynamics? Chemical exchange of Tyr residues - what information can be found about dynamics? I have an aromatic spectrum of Tyr residues in p53 DNA binding domain. No peaks are seen for Tyr-205 at high temp, but as temp decreases 4 peaks are shown. Tyr-163 and Tyr-236 show two peak each at high temps. How come there aren't 4 peaks? The dynamic processes are said to occur on different time scales. What is the interpretation of this information? How is the core domain of p53 influenced by this? Thanks for your help! Check if somebody has answered this question on NMRWiki QA forum	nmrlearner	News from other NMR forums	0	04-11-2011 12:48 AM
[NMR tweet] Yeah! Just found out I passed Nuclear Magnetic Resonance! #win Yeah! Just found out I passed Nuclear Magnetic Resonance! #win Published by iZoef (iZoef) on 2011-02-18T18:49:10Z Source: Twitter	nmrlearner	Twitter NMR	0	02-18-2011 07:42 PM
[CNS Yahoo group] Re: CNS: Command not found Re: CNS: Command not found Indeed - I should have tried to run plain cns command myself before jumping in... apologies. Maybe this from "Getting started" is helpful ... so I guess it's More...	nmrlearner	News from other NMR forums	0	12-18-2010 01:31 AM
[CNS Yahoo group] Re: CNS: Command not found Re: CNS: Command not found ... You didn't get an error message right there so you we know you're running (t)csh and the syntax of the cns_solve_env file is correct. To check that your More...	nmrlearner	News from other NMR forums	0	12-17-2010 12:55 PM
[CNS Yahoo group] Re: CNS: Command not found Re: CNS: Command not found Reading the manual is always a good idea. However, you should be able to type "cns" at the command prompt and start up an interactive CNS session. Assuming More...	nmrlearner	News from other NMR forums	0	12-17-2010 12:50 AM
[CNS Yahoo group] Re: CNS: Command not found Re: CNS: Command not found One suggestion is to rtfm. The basic command is cns_solve, not cns, and you'd have to provide it with the input file, etc. ... -- "I'd jump in myself, if I More...	nmrlearner	News from other NMR forums	0	12-17-2010 12:50 AM
[CNS Yahoo group] CNS: Command not found CNS: Command not found Need Help!! Downloaded the latest ver 1.3 to install on mac 10.6.5. When I type nwil10% source cns_solve_env More...	nmrlearner	News from other NMR forums	0	12-17-2010 12:50 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off