BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-15-2013, 03:12 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Re: Regarding processing problem of 2D TOCSY ucsf in sparky

Re: Regarding processing problem of 2D TOCSY ucsf in sparky

Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not More...
nmrlearner News from other NMR forums 0 05-14-2013 12:19 AM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hello Pancham, You can apply a chemical shift correction to your TOCSY spectrum using your ROESY spectrum as a reference: - First, do the peak picking of a few More...
nmrlearner News from other NMR forums 0 05-13-2013 11:36 AM
[NMR Sparky Yahoo group] Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Re: Regarding processing problem of 2D TOCSY ucsf in sparky Hi, Additionally, please post the output of ucsfdata program, which you can find in the bin folder of Sparky installation. Something like, ucsfdata TOCSY.ucsf More...
nmrlearner News from other NMR forums 0 05-10-2013 07:03 PM
[NMR Sparky Yahoo group] R: [nmr_sparky] Regarding processing problem of 2D TOCSY ucsf in spa
R: Regarding processing problem of 2D TOCSY ucsf in spa Hi Pancham, did you check the acquisition parameters you used to record the spectrum? Best, Marco Dr.Marco Sette, Ph.D. Department of Chemical Sciences and More...
nmrlearner News from other NMR forums 0 05-10-2013 06:58 AM
[NMR Sparky Yahoo group] Regarding processing problem of 2D TOCSY ucsf in sparky
Regarding processing problem of 2D TOCSY ucsf in sparky Dear sir/Madam, I am a sparky user and using this software for 2D NMR assignment....I used this software many time...I am facing a problem in ucsf file of 2D More...
nmrlearner News from other NMR forums 0 05-09-2013 05:37 PM
[Question from NMRWiki Q&A forum] 3d Tocsy-hsqc mgnetization transfer problem
3d Tocsy-hsqc mgnetization transfer problem Dear All,I acquired a 3d tocsy-hsqc edited on Bruker machine of small protein in micelles with a mixing time of 70ms. The problem is that I do not observe almoust spin system of each aminoacid, in detail I see only cross peaks between NH-HA. I obtained very good results by 3d Noesy-hsqc edited. How can I do to improve the magnetization transfer along the spin system and see all cross peaks? Do you think that this problem is due to the nature?Thank you in advance\ Check if somebody has answered this question on NMRWiki QA forum
nmrlearner News from other NMR forums 0 03-06-2012 06:17 PM
[Question from NMRWiki Q&A forum] Data processing and Sparky
Data processing and Sparky Dear NMRWikiers, I'm fresh in nmr field and would like to ask couple questions: 1. Our protein has about 132 residues.The NHSQC is well dispersed but many peaks can't be found in CBCANH and CBCACONH. HNCA/HNCOCA + HNCO/HNCACO are planned for backbone assignment. Other people processed data with NMRPipe. The NHSQC peaks can mostly find matching peaks in HNCO/HNCACO, while HNCA/HNCOCA can't be matched (no same resonances can be seen when synchronized). But, many peaks can be seen in HNCA/HNCOCA. I found that the whole scale of 13C axis in HNCA is from 51 to 66 and...
nmrlearner News from other NMR forums 0 01-26-2012 02:22 PM
[NMR Sparky Yahoo group] Re: Sparky on Ubuntu 11.04 problem
Re: Sparky on Ubuntu 11.04 problem Dear All, I found out later that I have to install the tcsh in order to have Sparky running properly. Thanks for the replys! Best More...
nmrlearner News from other NMR forums 0 05-17-2011 08:40 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:10 AM.


Map