CNS Yahoo group Re: Real space R values

		BioNMR > NMR community > News from other NMR forums
[CNS Yahoo group] Re: Real space R values

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

12-18-2010, 01:31 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Re: Real space R values

Re: Real space R values

Please use CNS v1.3. In this latest version, model_map.inp computes both Fo-Fc and 2Fo-Fc maps and calculates the real space R value from the 2Fo-Fc map. Axel

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[KPWU blog] Ramachandran space of Glycine and Proline Ramachandran space of Glycine and Proline The following two plots are made according to the statistical values provided by the Richardson group. I download the KINEMAGE format of Glycine and Proline. Inside the two files, core and allowed regions are defined and can be extracted to make my own Ramachandran plot. The defined core and allowed regions are also shown in http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=397&subd=kpwu&ref=&feed=1 Go to KPWU blog to read complete post.	nmrlearner	News from NMR blogs	0	06-18-2011 03:04 AM
[CNS Yahoo group] Re: Real space R values Re: Real space R values Hi, The map for which you'd like to calculate the Real Space R-values is the 2Fo-Fc map (or the equivalent, based on ML calculation). It's this map to which More...	nmrlearner	News from other NMR forums	0	12-18-2010 01:31 AM
[CNS Yahoo group] Real space R values Real space R values Dear all, I have had problem with the calculated results of the real space R factors. The input file I used was model_map.inp, from the template. Totally More...	nmrlearner	News from other NMR forums	0	12-18-2010 01:31 AM
Introductory NMR & MRI: Video 09-2: k-space in multiple dimensions Introductory NMR & MRI: Video 09-2: k-space in multiple dimensions http://i.ytimg.com/vi/SrG_w5v3R8A/default.jpg Introductory NMR & MRI: Video 09-2: k-space in multiple dimensions Paul Callaghan gives an introduction to NMR and MRI. This is part 2 of the 9th video of the series and talks about Magnetic Resonance Imaging (MRI). 10 episode series produced by Magritek Ltd. From:magritek Views:5659 http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif...	nmrlearner	NMR educational videos	0	12-06-2010 09:44 PM
[NMR paper] Fast multidimensional NMR: radial sampling of evolution space. Fast multidimensional NMR: radial sampling of evolution space. Related Articles Fast multidimensional NMR: radial sampling of evolution space. J Magn Reson. 2005 Apr;173(2):317-21 Authors: Kupce E, Freeman R Multidimensional NMR spectroscopy can be speeded up by limited radial sampling of the time-domain evolution data. The resulting frequency-domain projections are used to reconstruct the full NMR spectrum. New algorithms are proposed to suppress back-projection artifacts while retaining optimum sensitivity. The method is illustrated by...	nmrlearner	Journal club	0	11-25-2010 08:21 PM
[NMR software blog] Interstellar Space Interstellar Space One of the most ancient 2-D experiments has always been more talked about than practiced. The INADEQUATE was invented 30 years ago (an era in which many chemists were still using CW-NMR) and has always been regarded as a the future thing, like travels to the Moon. Everybody agrees it is useful, but the experimental difficulties are discouraging. The information that can be extracted by this experiment is a formidable aid to unveil the structure of unknown natural compounds. For a long time, however, the experiment has been nearly impossible. You needed a powerful...	nmrlearner	News from NMR blogs	0	09-02-2010 01:19 AM
[Stan NMR blog] Is every finite-dimensional Hilbert space a spin-space? Is every finite-dimensional Hilbert space a spin-space? Every linear operator on any finite Hilbert space can be generated from spin operators. More...	nmrlearner	News from NMR blogs	0	08-21-2010 06:14 PM
Introductory NMR & MRI: Video 09-1: Introduction to k-space Introductory NMR & MRI: Video 09-1: Introduction to k-space http://i.ytimg.com/vi/XJvVnlMv1LQ/default.jpg Introductory NMR & MRI: Video 09-1: Introduction to k-space Paul Callaghan gives an introduction to NMR and MRI. This is part 1 of the 9th video of the series and talks about Magnetic Resonance Imaging (MRI). 10 episode series produced by Magritek Ltd. From: magritek Views: 5510 http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif http://gdata.youtube.com/static/images/icn_star_full_11x11.gif...	nmrlearner	NMR educational videos	0	08-18-2010 01:38 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off