NMR Sparky Yahoo group Re: Pseudo 3D T2_relaxation

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Re: Pseudo 3D T2_relaxation

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-16-2011, 08:22 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Re: Pseudo 3D T2_relaxation

Re: Pseudo 3D T2_relaxation

Hi Mohammad, Sparky has no capability to treat a 3-d spectrum as a stack of 2-d spectra. So even if you succeed at getting this in UCSF format it won't be

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: Pseudo 3D T2_relaxation Re: Pseudo 3D T2_relaxation Hi Mohammed, I could envision several solutions to your problem. The easiest is simply this: transform your spectra so that each plane corresponds to a single More...	nmrlearner	News from other NMR forums	0	05-16-2011 08:22 AM
[NMR Sparky Yahoo group] Re: Pseudo 3D T2_relaxation Re: Pseudo 3D T2_relaxation Hi Mohammed, I could envision several solutions to your problem. The easiest is simply this: transform your spectra so that each plane corresponds to a single More...	nmrlearner	News from other NMR forums	0	03-14-2011 05:38 AM
[NMR Sparky Yahoo group] Re: Pseudo 3D T2_relaxation Re: Pseudo 3D T2_relaxation Hi Mohammad, Sparky has no capability to treat a 3-d spectrum as a stack of 2-d spectra. So even if you succeed at getting this in UCSF format it won't be More...	nmrlearner	News from other NMR forums	0	02-23-2011 11:21 PM
[NMR Sparky Yahoo group] Re: Pseudo 3D T2_relaxation Re: Pseudo 3D T2_relaxation Hi Mohammad, Sparky has no capability to treat a 3-d spectrum as a stack of 2-d spectra. So even if you succeed at getting this in UCSF format it won't be More...	nmrlearner	News from other NMR forums	0	02-23-2011 11:18 PM
[Stan NMR blog] Spin phase states and magnetic pseudo-monopoles Spin phase states and magnetic pseudo-monopoles Discussion of the recent discovery of look-alikes of magnetic monopoles in spin ices Source: Stan blog library	nmrlearner	News from NMR blogs	0	02-13-2011 08:54 PM
Pseudo-4D triple resonance experiments to resolve HN overlap in the backbone assignment of unfolded proteins Pseudo-4D triple resonance experiments to resolve HN overlap in the backbone assignment of unfolded proteins Abstract The solution NMR resonance assignment of the protein backbone is most commonly carried out using triple resonance experiments that involve 15N and 1HN resonances. The assignment becomes problematic when there is resonance overlap of 15Nâ??1HN cross peaks. For such residues, one cannot unambiguously link the â??leftâ?? side of the NH root to the â??rightâ?? side, and the residues associated with such overlapping HN resonances remain often unassigned. Here we present a...	nmrlearner	Journal club	0	12-31-2010 08:38 PM
[NMR paper] Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy. Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy. Related Articles Dynamics of xenon binding inside the hydrophobic cavity of pseudo-wild-type bacteriophage T4 lysozyme explored through xenon-based NMR spectroscopy. J Am Chem Soc. 2005 Aug 24;127(33):11676-83 Authors: Desvaux H, Dubois L, Huber G, Quillin ML, Berthault P, Matthews BW Wild-type bacteriophage T4 lysozyme contains a hydrophobic cavity with binding properties that have been...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[Stan NMR blog] Spin phase states and magnetic pseudo-monopoles Spin phase states and magnetic pseudo-monopoles Discussion of the recent discovery of look-alikes of magnetic monopoles in spin ices. More...	nmrlearner	News from NMR blogs	0	08-21-2010 05:42 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off