NMR Sparky Yahoo group Re: problem with cormaspectrum command

		BioNMR > NMR community > News from other NMR forums
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-09-2012, 06:55 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,778

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Re: problem with cormaspectrum command

Re: problem with cormaspectrum command

The new version did fix that problem, and I can run the extensions from the menu. New questions pop up during the running ... Traceback (most recent call

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command Re: problem with cormaspectrum command Sparky is using Python os.fork() to run a stand-alone program peaks2ucsf that comes with Sparky in order to generate the CORMA spectrum. The fork routine is More...	nmrlearner	News from other NMR forums	0	05-09-2012 06:55 AM
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command Re: problem with cormaspectrum command Thanks for the help, with the new version, the extension problem has been fixed, but cormaspectrum still can not running well. it is stopped like below More...	nmrlearner	News from other NMR forums	0	05-09-2012 06:55 AM
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command Re: problem with cormaspectrum command Current Sparky versions (3.114 and 3.115) use Python 2.5 which is included with Sparky. Get the current version of Sparky and your problem will be solved. More...	nmrlearner	News from other NMR forums	0	05-08-2012 06:09 PM
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command Re: problem with cormaspectrum command The problem is I can not load Python extensions directly. My system is windows2008 server, and with sparky copied in the folder C:\Program More...	nmrlearner	News from other NMR forums	0	05-08-2012 06:09 PM
[NMR Sparky Yahoo group] Re: problem with cormaspectrum command Re: problem with cormaspectrum command The cormaspectrum.py file is not a command-line program. It is part of Sparky code that implements the menu entry Extensions / Spectrum /CORMA spectrum More...	nmrlearner	News from other NMR forums	0	05-08-2012 05:37 AM
[NMR Sparky Yahoo group] problem with cormaspectrum command problem with cormaspectrum command Dear all, This is the first time I use this command, but I faced some problem. After I press enter with the command line I got information like below. More...	nmrlearner	News from other NMR forums	0	05-08-2012 05:37 AM
[NMRpipe Yahoo group] Re: Command problem Re: Command problem Hi Eldho, I'm not sure that a simple redirect will work. Here's the three line script I've been using for the same thing. Cheers, Andrew #!/bin/csh xyz2pipe More...	NMRpipe Yahoo group news	News from other NMR forums	0	07-05-2011 06:01 PM
[NMRpipe Yahoo group] Re: Command problem Re: Command problem there should be a space after '-in' ? ... -- Peng Ji More...	NMRpipe Yahoo group news	News from other NMR forums	0	07-02-2011 05:30 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off