BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > NMR community > News from other NMR forums
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-04-2011, 12:30 AM
NMRpipe Yahoo group news's Avatar
Senior Member
 
Join Date: Aug 2010
Posts: 443
NMR Credits: 0
NMR Points: 0
Downloads: 0
Uploads: 0
Default Re: nmrDraw peak table format question

Re: nmrDraw peak table format question

Dear Dr Fitzkee, Thanks for your kind suggestion! I tried your script but it did not work on my redhat. I guess the ass.tab in the script is an nmrDraw format

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Peak height versus peak volume
Given a standard NOESY-based protein structure determination: Does anyone have any information on the benefits of measuring peak intensity by a volume integration method rather than simply measuring the peak height. Obviously integration is theoretically more accurate, but does it make any difference to the quality of the structures produced? especially if peak lineshapes are comparable? I was hoping to find some study comparing structures produced by both methods..... I'm also curious about the benefits of distance-calbrating NOEs to a curve rather than simply putting restraints...
paul NMR Questions and Answers 3 09-15-2015 07:48 PM
[NMRpipe Yahoo group] Cannot execute the spript to convert varian format to nmrpipe format
Cannot execute the spript to convert varian format to nmrpipe format Dear nmrpipe group, I have a group of data with Varian format (fid) and want to convert them to NMRPipe format (test.fid) I was able to read all data in varian More...
NMRpipe Yahoo group news News from other NMR forums 0 09-29-2011 07:36 PM
[NMRpipe Yahoo group] Re: nmrDraw peak table format question
Re: nmrDraw peak table format question Dear Dr Fitzkee, Thanks for your kind suggestion! I tried your script but it did not work on my redhat. I guess the ass.tab in the script is an nmrDraw format More...
NMRpipe Yahoo group news News from other NMR forums 0 06-04-2011 12:29 AM
[NMRpipe Yahoo group] Re: nmrDraw peak table format question
Re: nmrDraw peak table format question Jia, Yes and no. I have written several scripts to do this over the years, and I can share some of the simpler versions that you may be interested in. More...
NMRpipe Yahoo group news News from other NMR forums 0 06-02-2011 12:00 PM
[NMRpipe Yahoo group] nmrDraw peak table format question
nmrDraw peak table format question Dear all, I am wondering if there is any possibility to convert Sparky peak list into nmrDraw peak table? I have realized that it is required for the nmrDraw More...
NMRpipe Yahoo group news News from other NMR forums 0 06-02-2011 12:00 PM
[NMRwiki tweet] nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/
nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/ nmrwiki: Help explain missing peak in HMBC? Thanks! #nmrhttp://qa.nmrwiki.org/question/225/ Source: NMRWiki tweets
nmrlearner Twitter NMR 0 02-04-2011 07:12 PM
[NMR paper] Automated peak picking and peak integration in macromolecular NMR spectra using AUTOP
Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY. Related Articles Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY. J Magn Reson. 1998 Dec;135(2):288-97 Authors: Koradi R, Billeter M, Engeli M, Güntert P, Wüthrich K A new approach for automated peak picking of multidimensional protein NMR spectra with strong overlap is introduced, which makes use of the program AUTOPSY (automated peak picking for NMR spectroscopy). The main elements of this program are a novel...
nmrlearner Journal club 0 11-17-2010 11:15 PM
[NMRwiki tweet] nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian
nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian or jeol? http://qa.nmrwiki.org/question/150/ nmrwiki: Do you know how to create #NMR fids in raw format - either @bruker , varian or jeol? http://qa.nmrwiki.org/question/150/ Source: NMRWiki tweets
nmrlearner Twitter NMR 0 08-22-2010 01:49 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:15 AM.


Map